Identifiers and Description

Gene Model Identifier

TTHERM_00225720

Standard Name

RAB8B

Aliases

PreTt12482 | 19.m00274

Description

Rab VIII family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

GBrowse

Genome Browser (Micronucleus)

GBrowse

Gene Ontology Annotations

Cellular Component

Molecular Function

Biological Process

Domains

  • ( PF00071 ) Ras family
  • ( PF08477 ) Miro-like protein
  • ( PF01926 ) GTPase of unknown function
  • ( PF00025 ) ADP-ribosylation factor family
  • ( TIGR00231 ) small GTP-binding protein domain
  • ( TIGR02528 ) ethanolamine utilization protein, EutP

Gene Expression Profile

  • Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 15.6%

TetraMine Data

TTHERM_00225720

WebApollo

Fullscreen View

Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

SourceIdentifierScoreDescription
Tetrahymena borealisEI9_08923.14.0019235632881006e-109Ras family protein (205 aa)
OxytrichaContig7494.0.g644.998338612125368e-60Ras family
DictyBaseDDB_G02800435.997545490783615e-57rab8A on chromosome: 3 positio
n 3266503 to 3267523
WormBaseWBGene000042723.000458792073453e-56locus:rab-8 status:Confirmed
UniProt:G5EFC1 protein_id
:CCD68351.1
SGDYFL005W2.000555387360374e-52SEC4 Rab family GTPase essenti
al for vesicle-mediated exocyt
ic secretion and autophagy; as
sociates with the exocyst comp
onent Sec15p and may regulate
polarized delivery of transpor
t vesicles to the exocyst at t
he plasma membrane
Stentor CoeruleusSteCoe_251607.984904245686979e-30

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00225720(coding)
ATGTAAAGTAAATAAGACTATGATACATTAATTAAGTTACTTATCCTTGGTGATTCAGGA
GTAGGAAAAACTTGCTTTTTAGTGAATTACTGCAAAAAATCTTTTACTAGAATACATCTA
CCTACAATTGGTATTGATTATGAGCATAAATATGAAGATGTAGATGGAAAGCATGTTAAA
CTTTAAATTTGGGATACAGCTGGCCAAGAGAGGTTTAAAACTATTACTTAAAATTACTAT
AAAGGCTCTATGGGTATTATACTTGCATATAGTGTAACAGATCCTAATACCTTTAAAAAT
ATAGCAGACTGGATGAAATAAATTAGCGAAAGAGCAGATCCATCTGTTAAAATAGTAATT
ATAGCTACTAAAATTGACATGAAAGATTAAAGAAAGGTCTCAACTTAAGAAGGAGAAGAG
TTAGCTCAAAAATATGGAGTAAAATTTTTTGAAACTTCTGCTTTGGAAGGAACAAACGTC
ATAGAAGCATTTAAATGTATTGCTAGTTAAGCACTCTAAACAATTTAAGCATCTTCTCCA
ATTAATAACTTTAAAATAATTCAAAAACCTGTAATTTAATCTAAAAAATAAGAAAAAGAT
GCAAAATGTTGCTGA


>TTHERM_00225720(protein)
MQSKQDYDTLIKLLILGDSGVGKTCFLVNYCKKSFTRIHLPTIGIDYEHKYEDVDGKHVK
LQIWDTAGQERFKTITQNYYKGSMGIILAYSVTDPNTFKNIADWMKQISERADPSVKIVI
IATKIDMKDQRKVSTQEGEELAQKYGVKFFETSALEGTNVIEAFKCIASQALQTIQASSP
INNFKIIQKPVIQSKKQEKDAKCC


>TTHERM_00225720(gene)
ATGTAAAGTAAATAAGACTATGATACATTAATTAAGTTACTTATCCTTGGTGATTCAGGA
GTAGGAAAAACTTGCTTTTTAGTGAATTACTGCAAAAAATCTTTTACTAGAATACATCTA
CCTACAATTGGTATTGATTATGAGCATAAATATGAAGATGTAGATGGAAAGCATGTTAAA
CTTTAAATTTGGGATACAGCTGGCCAAGAGAGGTTTAAAACTATTACTTAAAATTACTAT
AAAGGCTCTATGGGTATTATACTTGCATATAGTGTAACAGATCCTAATACCTTTAAAAAT
ATAGCAGACTGGATGAAATAAATTAGCGAAAGAGCAGATCCATCTGTTAAAATAGTAATT
ATAGCTACTAAAATTGACATGAAAGATTAAAGAAAGGTCTCAACTTAAGAAGGAGAAGAG
TTAGCTCAAAAATATGGAGTAAAATTTTTTGAAACTTCTGCTTTGGAAGGAACAAACGTC
ATAGAAGCATTTAAATGTATTGCTAGTTAAGCACTCTAAACAATTTAAGCATCTTCTCCA
ATTAATAACTTTAAAATAATTCAAAAACCTGTAATTTAATCTAAAAAATAAGAAAAAGAT
GCAAAATGTTGCTGA