Identifiers and Description

Gene Model Identifier

TTHERM_00079900

Standard Name

RAB6C

Aliases

PreTt10235 | 5.m00586 | 3828.m01498

Description

Rab VI family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622

Molecular Function

• GTP binding (IEA) | GO:0005525

Biological Process

• small GTPase mediated signal transduction (IEA) | GO:0007264

Domains

• ( PF00071 ) Ras family
• ( PF00350 ) Dynamin family
• ( PF08477 ) Miro-like protein
• ( PF01926 ) GTPase of unknown function
• ( PF00025 ) ADP-ribosylation factor family
• ( TIGR00231 ) small GTP-binding protein domain

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 16.9%

TetraMine Data

TTHERM_00079900

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_06960.1	2.999370583638828e-134	Ras family protein (227 aa)
DictyBase	DDB_G0268068	1.000296925633081e-74	rab6 on chromosome: 1 position 1398472 to 1399280
WormBase	WBGene00004269	5.99869294248238e-71	locus:rab-6.1 Ras-related pr otein Rab-6.1 status:Confirm ed UniProt:P34213 protein_ id:CAA77590.1
Oxytricha	Contig5831.0.g6	5.997672135862771e-69	Ras family
SGD	YLR262C	3.0000115468388957e-66	YPT6 Rab family GTPase, Ras-li ke GTP binding protein involve d in the secretory pathway, re quired for fusion of endosome- derived vesicles with the late Golgi, maturation of the vacu olar carboxypeptidase Y; has s imilarity to the human GTPase, Rab6
Stentor Coeruleus	SteCoe_6177	1.0806392777072785e-30

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00079900(coding)
ATGCAAAACACTACTACAGGACCTGTCGTTAAATTTAAAATAGTTTTTCTTGGTGACTAA
TCAGTAGGAAAAACCTCTATCATCAATCGTTTTATTTACGATAACTTCACTGGAAGTGAA
TAACCTACTGTTGGTATCGATTTCATTTGCAAAACCCTATAAATGGATAATAAAACTTTG
AGACTTCAACTTTGGGATACTGCTGGTTAAGAACGTTTCAAGAGTTTAATTCCCAGTTAT
ATTAGAGATTCAAATGCAGCTATCATTGTTTACGATATCACTAATCAAAATTCCTTTAGC
AATGTCACTAAATGGGTAGAAGAGGTTAAAGAAGAAAGAGGAAACAACGCTTTTATTTTT
ATTTTAGGAAACAAATCTGATTTAGAAGATAGAAAGGTGTCTCTTGAAGAAGGATAGGCT
AAAGCAAAGTAATTTGGTCTTAACTTCTGTGAAGTCTCTGCAAAAACAGGATAAAATATT
AGCAGCTTTTTTAAGAATTTATCTATGACACTCAGTGGAGGAAACTCTAACGAAACCCCT
AATTAGTAGCTATAGACAGATAATAAGTCAGGACAACCATAATAGCCAAGTAATAATAAC
GATAATGCAAATAAAGGCCAAAAATTATAGAATCCTTCAAAAACTGATGATAAGGATAAA
AAGAAAAAAGGAGGATGTTGTTGA

>TTHERM_00079900(protein)
MQNTTTGPVVKFKIVFLGDQSVGKTSIINRFIYDNFTGSEQPTVGIDFICKTLQMDNKTL
RLQLWDTAGQERFKSLIPSYIRDSNAAIIVYDITNQNSFSNVTKWVEEVKEERGNNAFIF
ILGNKSDLEDRKVSLEEGQAKAKQFGLNFCEVSAKTGQNISSFFKNLSMTLSGGNSNETP
NQQLQTDNKSGQPQQPSNNNDNANKGQKLQNPSKTDDKDKKKKGGCC

>TTHERM_00079900(gene)
ATGCAAAACACTACTACAGGACCTGTCGTTAAATTTAAAATAGTTTTTCTTGGTGACTAA
TCAGTAGGAAAAACCTCTATCATCAATCGTTTTATTTACGATAACTTCACTGGAAGTGAA
TAAGTATAGCATTTTTAAGATAGTTAATTTTAAAAACTTATAATTGTAGTTAATTCTAAA
ATGCCTGTCAAATAATGCATTATGCATATCAAATTTATAATAAAAATACTTATTTAAATA
TTCAATATATTCAATTTTATTTTTTAATTATGTTAGCCTACTGTTGGTATCGATTTCATT
TGCAAAACCCTATAAATGGATAATAAAACTTTGAGACTTCAACTTTGGGATACTGCTGGT
TAAGAACGTTTCAAGAGTTTAATTCCCAGTTATATTAGAGATTCAAATGCAGCTATCATT
GTTTACGATATCACTAGTATATTCTATATTTTAAATATATTTCTAAGCAAAAAATAGTTT
TATGTTTCTTTTTTTGCTTCTAACGATTAATTATTATTTTGTATTACAAAGATCAAAATT
CCTTTAGCAATGTCACTAAATGGGTAGAAGAGGTTAAAGAAGAAAGAGGAAACAACGCTT
TTATTTTTATTTTAGGAAACAAATCTGATTTAGAAGATAGGTAAAAATTTAAATTTTCTC
AGCTATTAAAATTTGTTTATATATTGTGAACATAATAATAAAGAAAATTAAATTTTTTGT
TTTATTAATTAATCATACAGAAAGGTGTCTCTTGAAGAAGGATAGGCTAAAGCAAAGTAA
TTTGGTCTTAACTTCTGTGAAGTCTCTGCAAAAACAGGATAAAATATTAGCAGCTTTTTT
AAGAATTTATCTATGACACTCAGTGGAGGAAACTCTAACGAAACCCCTAATTAGTAGCTA
TAGACAGATAATAAGTCAGGACAACCATAATAGCCAAGTAATAATAACGATAATGCAAAT
AAAGGCCAAAAATTATAGAATCCTTCAAAAACTGATGATAAGGATAAAAAGAAAAAAGGA
GGATGTTGTTGA