Identifiers and Description

Gene Model Identifier

TTHERM_01079210

Standard Name

RAB6B

Aliases

PreTt17436 | 221.m00056 | 3832.m00157

Description

Rab VI family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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Gene Ontology Annotations

Cellular Component

Molecular Function

Biological Process

Domains

  • ( PF00071 ) Ras family
  • ( PF00350 ) Dynamin family
  • ( PF08477 ) Miro-like protein
  • ( PF01926 ) GTPase of unknown function
  • ( PF00025 ) ADP-ribosylation factor family
  • ( TIGR00231 ) small GTP-binding protein domain
  • ( TIGR02528 ) ethanolamine utilization protein, EutP
  • ( TIGR00650 ) GTP-binding conserved hypothetical protein

Gene Expression Profile

  • Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10%

TetraMine Data

TTHERM_01079210

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

SourceIdentifierScoreDescription
Tetrahymena borealisEI9_20320.15.997411300273806e-139Ras family protein (226 aa)
DictyBaseDDB_G02680684.000308233752481e-69rab6 on chromosome: 1 position
1398472 to 1399280
WormBaseWBGene000042694.99966753182923e-69locus:rab-6.1 Ras-related pr
otein Rab-6.1 status:Confirm
ed UniProt:P34213 protein_
id:CAA77590.1
OxytrichaContig5831.0.g62.0009381340492598e-66Ras family
SGDYLR262C3.9989468726312675e-65YPT6 Rab family GTPase, Ras-li
ke GTP binding protein involve
d in the secretory pathway, re
quired for fusion of endosome-
derived vesicles with the late
Golgi, maturation of the vacu
olar carboxypeptidase Y; has s
imilarity to the human GTPase,
Rab6
Stentor CoeruleusSteCoe_61771.462486227251231e-31

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_01079210(coding)
ATGCAAGATTAAAGCATAACAAAATAAGTTAAAAAATATAAATTAGTTTTTATTGGAGAT
TAGTCTGTTGGAAAAACTTCAATCATCAATAGATTTATAAACGACTCATTTTAGGGAACG
CAATAACCTACAGTTGGTATCGACTTCGTTGCAAAAACACTTCATTTAGATAATAAAACA
ATCAGATTATAATTATGGGATACTGCTGGTTAAGAACGTTTTAGAAGTTTAATACCCTCA
TATATCAGAGATTCTGATGCAGCTATAATTGTCTATGATATAACAAACTAAGCTTCATTT
GCAAGTGTAAACAAATGGTTAGATTACGTAAGAGAAGAAAGAGGAGATGGCGTTTTGATA
GTTTTATTGGCAAATAAATTAGATTTACCTGATTAAAGAGCTGTTTAAACTGTGGATGGA
TAGCAATTTGCAAAATAACAAAATTTAATATTCAGTGAAGTTTCTGCTAAGGAAGGAAAT
AATATAAATGATGTTTTCAAAAATTTAGCTTAACTTTTATAAGGAAGTGAAAAATCTGAT
CAAACTGATATGGATTTGGGAATTAAAGGCGCAGCTAGTAATAATAGCAAATGCACTACT
GCAGGAGGAACAATATAGTTAAGTACTAACTAAGATGCACCTGTTAAGTAAACTTAAGAC
AAATAGTGTTAATGTTGA


>TTHERM_01079210(protein)
MQDQSITKQVKKYKLVFIGDQSVGKTSIINRFINDSFQGTQQPTVGIDFVAKTLHLDNKT
IRLQLWDTAGQERFRSLIPSYIRDSDAAIIVYDITNQASFASVNKWLDYVREERGDGVLI
VLLANKLDLPDQRAVQTVDGQQFAKQQNLIFSEVSAKEGNNINDVFKNLAQLLQGSEKSD
QTDMDLGIKGAASNNSKCTTAGGTIQLSTNQDAPVKQTQDKQCQC


>TTHERM_01079210(gene)
ATATATAAATTAATTAAAAGTAAAAAATCTAAAACTAAGGAAATTAAAACCTTAAATAAT
AGGAATAAGTCCATCAAAAATATTAAGCAGATAGAAATAGAAATGCAAGATTAAAGCATA
ACAAAATAAGTTAAAAAATATAAATTAGTTTTTATTGGAGATTAGTCTGTTGGAAAAACT
TCAATCATCAATAGATTTATAAACGACTCATTTTAGGGAACGCAATAAGTAAGCTGCAAT
ATTTTGATATTTAAACATTTTTTAAATATTTAATTGACATAAGCTCTTAATAAACAAACT
TACTTAAGGATTATATTGATACATTATTATAAACAGCAAATGAATAAGATTAATTCTTTT
ATTTTATAACTTAGCCTACAGTTGGTATCGACTTCGTTGCAAAAACACTTCATTTAGATA
ATAAAACAATCAGATTATAATTATGGGATACTGCTGGTTAAGAACGTTTTAGAAGTTTAA
TACCCTCATATATCAGAGATTCTGATGCAGCTATAATTGTCTATGATATAACAAGTATAT
AAAACGAACTATTATAATATTGGTCAATTTTAAGATTAATTTTTAATCAATAGACTAAGC
TTCATTTGCAAGTGTAAACAAATGGTTAGATTACGTAAGAGAAGAAAGAGGAGATGGCGT
TTTGATAGTTTTATTGGCAAATAAATTAGATTTACCTGATTAAAGGTAACTCTATTTAAT
AATTAAATAATTTAACCAATATGTGTATATTTAATTAGAGCTGTTTAAACTGTGGATGGA
TAGCAATTTGCAAAATAACAAAATTTAATATTCAGTGAAGTTTCTGCTAAGGAAGGAAAT
AATATAAATGATGTTTTCAAAAATTTAGCTTAACTTTTATAAGGAAGTGAAAAATCTGAT
CAAACTGATATGGATTTGGGAATTAAAGGCGCAGCTAGTAGTATTATTTGAAGAAATATA
TGTTTTTATTTTTGAAATATTTTAATTTTATAATCAAGATAATAGCAAATGCACTACTGC
AGGAGGAACAATATAGTTAAGTACTAACTAAGATGCACCTGTTAAGTAAACTTAAGACAA
ATAGTGTTAATGTTGA