Identifiers and Description

Gene Model Identifier

TTHERM_00711980

Standard Name

RAB5A

Aliases

PreTt16858 | 112.m00102

Description

Rab V family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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Gene Ontology Annotations

Cellular Component

Molecular Function

Biological Process

Domains

Gene Expression Profile

  • Tetrahymena Functional Genomics Database:

TetraMine Data

TTHERM_00711980

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

SourceIdentifierScoreDescription
Tetrahymena borealisEI9_14141.11.9992982665753866e-121small GTP-binding protein doma
in-containing protein (204 aa)
WormBaseWBGene000042682.9987037581344066e-55locus:rab-5 status:Partially
_confirmed UniProt:P91857
protein_id:CAB04205.1
OxytrichaContig9887.0.g773.998181939598921e-51Ras family
DictyBaseDDB_G02719847.002411919958887e-50rab5A on chromosome: 2 positio
n 1113320 to 1114208
SGDYOR089C2.999661265281073e-47VPS21 Rab family GTPase requir
ed for endocytic transport and
for sorting of vacuolar hydro
lases; localized in endocytic
intermediates; detected in mit
ochondria; geranylgeranylation
required for membrane associa
tion; mammalian Rab5 homolog
Stentor CoeruleusSteCoe_242124.780892883885469e-25

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00711980(coding)
ATGTACGCAGAAGAAATTAAAGTTGTCATATTAGGAAATTCAGGTGTTGGAAAAAGCAGC
ATTATGATGAGATTTGTCAAGGATGAGTTTTCAGCTACTTAGCCAACAACAATGGGTGCA
GCATTTATGTCAAAAATAATCAAGACAAATGATAATTAATTTAAATTTTAGATTTGGGAT
ACTGCAGGACAAGAGAAGTATAAATCTTTGGCACCCCTTTACTATAGAGAGGCCAGAATA
GGAATTGTAGTTTATGATATAACTTCTTTAGCTTCTTTTGGAGTATTAAAGACTTGGATT
ACAGAATTACAAAAATAAGGCCCAGAAAACTTGATATTAGCAATAGTCGGCAATAAATCA
GATTTACAGGATAAATAAGAAGTTCCTTACGAAGATGCAATGAATTTCGCTAAGTAAGTT
GACGCCCTTTTTGAGCTGACTAGTGCCAAAGAAAACAGAGGAATCAATGATTTATTCATG
AAGTTAGCTAGTAAAATCGAGTAGTAAAAAATATAAAACAGCATGAAAAAAAATGTCAGT
AGTTAATCTTTTGCAGTTAATAGCAATTAACATAATAAACAAGGATCTTGCCCCTGTTGA


>TTHERM_00711980(protein)
MYAEEIKVVILGNSGVGKSSIMMRFVKDEFSATQPTTMGAAFMSKIIKTNDNQFKFQIWD
TAGQEKYKSLAPLYYREARIGIVVYDITSLASFGVLKTWITELQKQGPENLILAIVGNKS
DLQDKQEVPYEDAMNFAKQVDALFELTSAKENRGINDLFMKLASKIEQQKIQNSMKKNVS
SQSFAVNSNQHNKQGSCPC


>TTHERM_00711980(gene)
ATGTACGCAGAAGAAATTAAAGTTGTCATATTAGGAAATTCAGGTTTTTTTTAGAACTTT
TGACAATATTCCAAACAAAAGTATTAATTAACCCTATTTGGTTATTCTAAAAAAGGTGTT
GGAAAAAGCAGCATTATGATGAGATTTGTCAAGGATGAGTTTTCAGCTACTTAGCCAACA
ACAATGGGTGCAGCATTTATGTCAAAAATAATCAAGACAAATGATAATTAATTTAAATTT
TAGGTAACAAATTATTTCTACTGATTATATTGAAAGAAAGAAATAAACAAACATATTAAT
TAATTGAACAGATTTGGGATACTGCAGGACAAGAGAAGTATAAATCTTTGGCACCCCTTT
ACTATAGAGGTAAGTAAACTTTATAAGTTTAATTTAAAATTGCAAAATTTATTTTTATAT
AAAAAGAGGCCAGAATAGGAATTGTAGTTTATGATATAACTTCTTTAGCTTCTTTTGGAG
TATTAAAGACTTGGATTACAGAATTACAAAAATAAGGCCCAGAAAACTTGAGTAAATAAA
TAAAATTAAGATGATTAAGGACTAGAATTGATTCATTGATTGTATTTATAAATAATAAAA
ATAGTATTAGCAATAGTCGGCAATAAATCAGATTTACAGGATAAATAAGAAGTTCCTTAC
GAAGATGCAATGAATTTCGCTAAGGTATAATTTTAGAACAAACTAAACAAAGCAGCAATT
TATTAATTAATTGAAATTAATAATTCTTTTATTAAAAAACTAAAAAGTAAGTTGACGCCC
TTTTTGAGCTGACTAGTGCCAAAGAAAACAGAGGAATCAATGTAAAAATAGCATTTTATA
CATTTAGAATGATTTGAAATAAATAAACTTTTAATTATTCGTTCATTCATTTTAATTCCT
TCATTAATTTAATTGGTTGATTAATTATTTAGGATTTATTCATGAAGTTAGCTAGTAAAA
TCGAGTAGTAAAAAATATAAAACAGCATGAAAAAAAATGTCAGTAGTTAATCTTTTGCAG
TTAATAGCAATTAACATAATAAACAAGGATCTTGCCCCTGTTGA