Identifiers and Description

Gene Model Identifier

TTHERM_00298510

Standard Name

RAB57 (RAB GTPase 57)

Aliases

PreTt19253 | 28.m00212 | 3691.m00031

Description

Novel Rab family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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Gene Ontology Annotations

Cellular Component

Molecular Function

Biological Process

Domains

Gene Expression Profile

  • Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.2%

TetraMine Data

TTHERM_00298510

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

SourceIdentifierScoreDescription
Tetrahymena borealisEI9_07579.13.0006488705143073e-92small GTP-binding protein doma
in-containing protein (172 aa)
OxytrichaContig80.0.1.g1119.996273942859018e-26Ras family
WormBaseWBGene000042672.99851380290819e-19locus:rab-3 Ras-related prot
ein Rab-3 status:Confirmed
UniProt:Q94986 protein_id:C
CD65021.1
DictyBaseDDB_G02721381.999598840915195e-17rab2B on chromosome: 2 positio
n 1483407 to 1484594
SGDYFL038C0.000000000000006000101554955223YPT1 Rab family GTPase, involv
ed in the ER-to-Golgi step of
the secretory pathway; complex
formation with the Rab escort
protein Mrs6p is required for
prenylation of Ypt1p by prote
in geranylgeranyltransferase t
ype II (Bet2p-Bet4p)
Stentor CoeruleusSteCoe_281980.00000000027894680928689246

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00298510(coding)
ATGTATACAACTAATGGTTAAACCTTCTTGAAAGATTATAATATGACTTAAGCTGCAGAA
GTTTCTTCCAAAATCATTCCTTTTCCTGAAAAAGATAAAGATGTAGAGCTTTTCTTTTTT
GATATTAGTGGATAAGACTGCTACTAATCGATCACATCTGAGTTACTAGGACAAGCAGAT
CTTTTAGTTTTAGTTTATGATTGCACAAGCTAAGAAAGCTACAATAAACTTTAGACATGG
TATGATAAAGTCAAACAAAAGAATTCTAAATCTCTTTAAGGTGTTTTAATTTCAACTAAA
AACGATTTAAGTGGTGCTAGATAAGTAGATCCTCAACAAGCAAGAGACTTAGCAAAGAAA
CTTAATTTATAATTTTTTGAAGTTTCTTCAGCACGTAATACCAACATAGATCTACCTTTC
TAAAACTTAGCAGAAAGACTTGTATGA


>TTHERM_00298510(protein)
MYTTNGQTFLKDYNMTQAAEVSSKIIPFPEKDKDVELFFFDISGQDCYQSITSELLGQAD
LLVLVYDCTSQESYNKLQTWYDKVKQKNSKSLQGVLISTKNDLSGARQVDPQQARDLAKK
LNLQFFEVSSARNTNIDLPFQNLAERLV


>TTHERM_00298510(gene)
ATGTATACAACTAATGGTTAAACCTTCTTGAAAGATTATAATATGGTACATAAATATTTG
CATTAAAATGATAAAGTTTACTTATATCAAATTAACTTAAATTATTTATTAAACAGACTT
AAGCTGCAGAAGTTTCTTCCAAAATCATTCCTTTTCCTGAAAAAGATAAAGATGTAGAGC
TTTTCTTTTTTGATATTAGTGGATAAGACTGCTACTAATCGATCACATCTGAGTTAGTAA
AAATATTAAAAAGTTAGCAAAACAATATTTTAAAAACTCTTCTTTTTAATAGCTAGGACA
AGCAGATCTTTTAGTTTTAGTTTATGATTGCACAAGCTAAGAAAGCTACAATAAACTTTA
GACATGGTATGATAAAGTCAAACAAAAGAATTCTAAATCTCTTTAAGGTGATTAAATAAA
TGAATATATTTTAGTTAGGTTATTGACAGTTATTAATATATAAAAGGTGTTTTAATTTCA
ACTAAAAACGATTTAAGTGGTGCTAGATAAGTAGATCCTCAACAAGCAAGAGACTTAGCA
AAGAAACTTAATTTATAATTTTTTGAAGTTTCTTCAGCACGTAATACCAACATAGATCTA
CCTTTCTAAAACTTAGCAGAAAGACTTGTATGA