Identifiers and Description

Gene Model Identifier

TTHERM_00711970

Standard Name

RAB55

Aliases

PreTt16857 | 112.m00101

Description

Novel Rab family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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Gene Ontology Annotations

Cellular Component

Molecular Function

Biological Process

Domains

Gene Expression Profile

  • Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 11.5%

TetraMine Data

TTHERM_00711970

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

SourceIdentifierScoreDescription
Tetrahymena borealisEI9_14140.13.998604088504543e-111Ras family protein (196 aa)
OxytrichaContig15751.0.0.g874.000139296874041e-45Ras family
WormBaseWBGene000042689.997441244797434e-45locus:rab-5 status:Partially
_confirmed UniProt:P91857
protein_id:CAB04205.1
SGDYLR262C3.00039543526891e-44YPT6 Rab family GTPase, Ras-li
ke GTP binding protein involve
d in the secretory pathway, re
quired for fusion of endosome-
derived vesicles with the late
Golgi, maturation of the vacu
olar carboxypeptidase Y; has s
imilarity to the human GTPase,
Rab6
DictyBaseDDB_G02680682.0000236365077126e-43rab6 on chromosome: 1 position
1398472 to 1399280
Stentor CoeruleusSteCoe_367767.095474162284704e-23

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00711970(coding)
ATGTAAATGCAATAGATATAAGTTAAAACAGTTTTTTTAGGAGATGCAAATGTAGGTAAA
AGCAGCATTCTCTGTAGATTTATAGATGATTAGTTTGATGAAAATATTTAGGCAACTTCT
GGAGCTGATTTTAAAGTTAAATCAATCACTTACAACAATAAAAAAATAGATTTTCATCTT
TGGGATACAGCTGGACAAGAACGCTTTCGCTCTCTTACATAGCTATACTATAAAGATGCT
TCTGTGGCTTGCATAGTTTATGACATAACAAATAGGAATTCGTTTGAAGTTTTAAATTAT
TGGTTTAAAGAGTTGAAATAGCATGCCAAAGAAAATATTATAAAAATTATAATTGGCAAC
AAAATGGATTTAAGTCAATAATAATAAGTCCAATTAGACAAGGCACAAACCATGGCTAAA
ACTAACGATGCTATTCTCGTATTAACAAGTGCAAGAGAAGGAACAGGAGTTCAAGAAGTC
TTTTAAAAGATAGCAGTTTAAATAGAGTAATCACAATCTGAGCAAATTAAATAAAAGCAA
GCCACAAAAATTATGAAGCCTTAAGAATAAAAAAAACCATCCTGTTGCTGA


>TTHERM_00711970(protein)
MQMQQIQVKTVFLGDANVGKSSILCRFIDDQFDENIQATSGADFKVKSITYNNKKIDFHL
WDTAGQERFRSLTQLYYKDASVACIVYDITNRNSFEVLNYWFKELKQHAKENIIKIIIGN
KMDLSQQQQVQLDKAQTMAKTNDAILVLTSAREGTGVQEVFQKIAVQIEQSQSEQIKQKQ
ATKIMKPQEQKKPSCC


>TTHERM_00711970(gene)
ATGTAAATGCAATAGATATAAGTTAAAACAGTTTTTTTAGGAGATGCAAGTAATCAGAAC
ATATTATGAATGGTGTGATTGAGTCTAAATTTCATTTTTTAATTTTAATTAGATGTAGGT
AAAAGCAGCATTCTCTGTAGATTTATAGATGATTAGTTTGATGAAAATATTTAGGCAACT
TCTGGAGCTGATTTTAAAGTTAAATCAATCACTTACAACAATAAAAAAATAGATTTTCAT
GTAAGTTGGTTAATTTAGAATTATTTAAGCAGCTAATTTAATCATTTTTTATTTTTCTTC
GTTTATTAAGCTTTGGGATACAGCTGGACAAGAACGCTTTCGCTCTCTTACATAGCTATA
CTATAAAGATGCTTCTGTGGCTTGCATAGTTTATGACATAACAAATAGGAATTCGTTTGA
AGTTTTAAATTATTGGTTTAAAGAGTTGAAATAGCATGCCAAAGAAAATATTAGTATGAA
TTATCAAATCCTTCAATACAAATTATTTTCTTGTTTATTTATTTCTTAGGAATTAATAAC
ATTTTTTTAAATAGTAAAAATTATAATTGGCAACAAAATGGATTTAAGTCAATAATAATA
AGTCCAATTAGACAAGGCACAAACCATGGCTAAAGTAAAACAAGCAACTTGTCTTTATTT
GTTGATACTTGTTTTATTAATATTTAGAAATATTTTAATTAGGAGAACATAATATTTGGT
ATTAATTTTATATTTATTTATTTAATAAGACTAACGATGCTATTCTCGTATTAACAAGTG
CAAGAGAAGGAACAGGAGTTCAAGTAGAATTTATTTAGTATAAACAAAAATTTACCTATT
TCATTTATTTACTTATTTAATCAAAGGAAGTCTTTTAAAAGATAGCAGTTTAAATAGAGT
AATCACAATCTGAGCAAATTAAATAAAAGCAAGCCACAAAAATTATGAAGCCTTAAGAAT
AAAAAAAACCATCCTGTTGCTGA