Identifiers and Description

Gene Model Identifier

TTHERM_00711970

Standard Name

RAB55

Aliases

PreTt16857 | 112.m00101

Description

Novel Rab family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622

Molecular Function

• GTP binding (IEA) | GO:0005525

Biological Process

• small GTPase mediated signal transduction (IEA) | GO:0007264

Domains

• ( PF00071 ) Ras family
• ( PF08477 ) Miro-like protein
• ( PF00025 ) ADP-ribosylation factor family
• ( TIGR00231 ) small GTP-binding protein domain

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 11.5%

TetraMine Data

TTHERM_00711970

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_14140.1	3.998604088504543e-111	Ras family protein (196 aa)
Oxytricha	Contig15751.0.0.g87	4.000139296874041e-45	Ras family
WormBase	WBGene00004268	9.997441244797434e-45	locus:rab-5 status:Partially _confirmed UniProt:P91857 protein_id:CAB04205.1
SGD	YLR262C	3.00039543526891e-44	YPT6 Rab family GTPase, Ras-li ke GTP binding protein involve d in the secretory pathway, re quired for fusion of endosome- derived vesicles with the late Golgi, maturation of the vacu olar carboxypeptidase Y; has s imilarity to the human GTPase, Rab6
DictyBase	DDB_G0268068	2.0000236365077126e-43	rab6 on chromosome: 1 position 1398472 to 1399280
Stentor Coeruleus	SteCoe_36776	7.095474162284704e-23

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00711970(coding)
ATGTAAATGCAATAGATATAAGTTAAAACAGTTTTTTTAGGAGATGCAAATGTAGGTAAA
AGCAGCATTCTCTGTAGATTTATAGATGATTAGTTTGATGAAAATATTTAGGCAACTTCT
GGAGCTGATTTTAAAGTTAAATCAATCACTTACAACAATAAAAAAATAGATTTTCATCTT
TGGGATACAGCTGGACAAGAACGCTTTCGCTCTCTTACATAGCTATACTATAAAGATGCT
TCTGTGGCTTGCATAGTTTATGACATAACAAATAGGAATTCGTTTGAAGTTTTAAATTAT
TGGTTTAAAGAGTTGAAATAGCATGCCAAAGAAAATATTATAAAAATTATAATTGGCAAC
AAAATGGATTTAAGTCAATAATAATAAGTCCAATTAGACAAGGCACAAACCATGGCTAAA
ACTAACGATGCTATTCTCGTATTAACAAGTGCAAGAGAAGGAACAGGAGTTCAAGAAGTC
TTTTAAAAGATAGCAGTTTAAATAGAGTAATCACAATCTGAGCAAATTAAATAAAAGCAA
GCCACAAAAATTATGAAGCCTTAAGAATAAAAAAAACCATCCTGTTGCTGA

>TTHERM_00711970(protein)
MQMQQIQVKTVFLGDANVGKSSILCRFIDDQFDENIQATSGADFKVKSITYNNKKIDFHL
WDTAGQERFRSLTQLYYKDASVACIVYDITNRNSFEVLNYWFKELKQHAKENIIKIIIGN
KMDLSQQQQVQLDKAQTMAKTNDAILVLTSAREGTGVQEVFQKIAVQIEQSQSEQIKQKQ
ATKIMKPQEQKKPSCC

>TTHERM_00711970(gene)
ATGTAAATGCAATAGATATAAGTTAAAACAGTTTTTTTAGGAGATGCAAGTAATCAGAAC
ATATTATGAATGGTGTGATTGAGTCTAAATTTCATTTTTTAATTTTAATTAGATGTAGGT
AAAAGCAGCATTCTCTGTAGATTTATAGATGATTAGTTTGATGAAAATATTTAGGCAACT
TCTGGAGCTGATTTTAAAGTTAAATCAATCACTTACAACAATAAAAAAATAGATTTTCAT
GTAAGTTGGTTAATTTAGAATTATTTAAGCAGCTAATTTAATCATTTTTTATTTTTCTTC
GTTTATTAAGCTTTGGGATACAGCTGGACAAGAACGCTTTCGCTCTCTTACATAGCTATA
CTATAAAGATGCTTCTGTGGCTTGCATAGTTTATGACATAACAAATAGGAATTCGTTTGA
AGTTTTAAATTATTGGTTTAAAGAGTTGAAATAGCATGCCAAAGAAAATATTAGTATGAA
TTATCAAATCCTTCAATACAAATTATTTTCTTGTTTATTTATTTCTTAGGAATTAATAAC
ATTTTTTTAAATAGTAAAAATTATAATTGGCAACAAAATGGATTTAAGTCAATAATAATA
AGTCCAATTAGACAAGGCACAAACCATGGCTAAAGTAAAACAAGCAACTTGTCTTTATTT
GTTGATACTTGTTTTATTAATATTTAGAAATATTTTAATTAGGAGAACATAATATTTGGT
ATTAATTTTATATTTATTTATTTAATAAGACTAACGATGCTATTCTCGTATTAACAAGTG
CAAGAGAAGGAACAGGAGTTCAAGTAGAATTTATTTAGTATAAACAAAAATTTACCTATT
TCATTTATTTACTTATTTAATCAAAGGAAGTCTTTTAAAAGATAGCAGTTTAAATAGAGT
AATCACAATCTGAGCAAATTAAATAAAAGCAAGCCACAAAAATTATGAAGCCTTAAGAAT
AAAAAAAACCATCCTGTTGCTGA