Identifiers and Description

Gene Model Identifier

TTHERM_01079300

Standard Name

RAB54 (RAB GTPase 54)

Aliases

PreTt17445 | 221.m00065 | 3832.m00166

Description

RAB54 Rab-family small GTPase; Novel Rab family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622

Molecular Function

• GTP binding (IEA) | GO:0005525

Biological Process

• small GTPase mediated signal transduction (IEA) | GO:0007264

Domains

• ( PF00071 ) Ras family
• ( PF08477 ) Miro-like protein
• ( PF01926 ) GTPase of unknown function
• ( PF00025 ) ADP-ribosylation factor family
• ( TIGR00231 ) small GTP-binding protein domain
• ( PF00009 ) Elongation factor Tu GTP binding
• ( PF03677 ) Uncharacterised protein family (UPF0137)

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 13.2%

TetraMine Data

TTHERM_01079300

WebApollo

Fullscreen View

Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_20328.1	5.998305401373361e-129	Ras family protein (269 aa)
Oxytricha	Contig11247.0.g57	5.000201715856339e-35	Ras family
WormBase	WBGene00004282	2.0008113830639685e-30	locus:rab-30 status:Confirme d UniProt:Q9XWZ3 protein_i d:CAA21489.1
SGD	YFL038C	5.998760051700188e-30	YPT1 Rab family GTPase, involv ed in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by prote in geranylgeranyltransferase t ype II (Bet2p-Bet4p)
DictyBase	DDB_G0280043	9.99967697349061e-30	rab8A on chromosome: 3 positio n 3266503 to 3267523
Stentor Coeruleus	SteCoe_28945	6.305116760146989e-16

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_01079300(coding)
ATGGTGTAAATAGATATTATAATTATTGGAAACTCAGGGGCAGGTAAAACATGCTTAGCT
AAAAAATATGTTTCTGATAACAATAATGAAAATGATGGCGATGAATAAACAAATGGGAAC
CCTAATAAAATTAATGGCTGTGATCCTATGGAAATGAAACCAAATCCTACTATTGGAGTT
GATCATTTTAAAAAAAGAATCAAAGTAAATGATTTGAGCATTAAAATTGATTTATGGGAT
ACAGCAGGTTAGGAAAGATTTGGTGCTATTACTAAATCATTCTTCCAAAAAGCTGATGGA
GTTATTCTGACTTTTGACTTGACAGATTATGAAAGTTTTAGAAAAATTGAAGAATACTGG
CTGTAATAAGTGGAAGAGATTTCTAACAAAAGTATTAAAAAAATATTAATCGGTAACAAA
GTTGATAGGAACGAGGATAGAAAAGTTAGTGCTCTTTAGGGAGCTAATCTTGCTTCTAAA
TATAACATTAACTACTTTGAAACAAGTGCATTAACAGGAGAATCAGTCAATTTAAGTTTT
GATACACTGGTAAAATAATGTGCATTTGCAATCGAAGAACATAAAGGAAATTAAACTGAA
GACAACTTTAAAGTAATCCCTCATAAATCTAAATAGTTGAACTGCTTTGATAAAATGAAA
GAAATTTCAGAAAAGTTCTTTAAAATGATAACTCCTTCGAAAAAAAACAAATAGATATCT
AAAATAGATAGTACTAAATAAAGTAAGCCAGATGATGCTGTAGTACAATAGTAATTATAA
GAACTAAATAATAACATGGGTGTGTAATAGCAGATGTAAGAAATTAATCATGAAAAAGAA
TAATCTAAAAGTGTTTTAAATGAAACAAACGAAACCTAGTAATGA

>TTHERM_01079300(protein)
MVQIDIIIIGNSGAGKTCLAKKYVSDNNNENDGDEQTNGNPNKINGCDPMEMKPNPTIGV
DHFKKRIKVNDLSIKIDLWDTAGQERFGAITKSFFQKADGVILTFDLTDYESFRKIEEYW
LQQVEEISNKSIKKILIGNKVDRNEDRKVSALQGANLASKYNINYFETSALTGESVNLSF
DTLVKQCAFAIEEHKGNQTEDNFKVIPHKSKQLNCFDKMKEISEKFFKMITPSKKNKQIS
KIDSTKQSKPDDAVVQQQLQELNNNMGVQQQMQEINHEKEQSKSVLNETNETQQ

>TTHERM_01079300(gene)
ATGGTGTAAATAGATATTATAATTATTGGAAACTCAGGTAAATTCTAAAGCATATTTGGA
ATTTAAAATTTTTTTTTTTTGATTAAGTATTTCAACAAAAATTACAAAAAAGGATTAAAA
TGGAAAAAATATTGTATAATTATAAAATTATAAGAAATTTACGCAAAATTAAAAGCTATT
AAAAAAAATAAATGATTGATTATGTAAAATATTTTACATTTAATTAATTTAATAGGGGCA
GGTAAAACATGCTTAGCTAAAAAATATGTTTCTGATAACAATAATGAAAATGATGGCGAT
GAATAAAGTAATAAGGATAATAATATACATTTAATTAAATAATTGTTCAGCTTTTTTTCA
ATAAATGAATTATAGTATATGTAATTATAATATGAAATATTAAAGCAAATGGGAACCCTA
ATAAAATTAATGGCTGTGATCCTATGGAAATGAAACCAAATCCTACTATTGGAGTTGATC
ATTTTAAAAAAAGAATCAAAGTAAATGATTTGAGCATTAAAATTGATTTATGGGATACAG
CAGGTTAGGAAAGATTTGGTGCTATTACTAAATCATTCTTCCAAAAAGCTGATGGAGTTA
TTCTGACTTTTGACTTGACAGATTATGAAAGTTTTAGAAGTAATTTGAAAAATAATATAT
TATTTATTCTTTTATCAGTAATGTTTTGCTTTCTTCAAAGAACTGAGTATTTTAAGCTTG
AATACAAATAATGTCAAAGCTTTTTTTCTGACTGATTTACCGATTAAAAGTATGACAATA
ATAATAAAGAGATAAATACATATAGATCAATAGACTAATATTTTAATAAATTAAATTTAT
GATGACGTTTACAGACTTCAATTACAAACATATATTTTGTGAAGACGCTAAAATATTATT
ATTTTAATTAAAAGAAATTGAAGAATACTGGCTGTAATAAGTGGAAGAGATTTCTAACAA
AAGTATTAAAAAAATATTAATCGGTAACAAAGTTGATAGGAACGAGGTATTTCTTATAAT
ATTTCTTCTTCTATTTCTAAATTATTTTTAAATCAATTAGGATAGAAAAGTTAGTGCTCT
TTAGGGAGCTAATCTTGCTTCTAAATATAACATTAACTACTTTGAAACAAGGTAAAGGAT
ATTTTATTTAAACTCATTATTTTAATTTGATATTTTATTATTTTGGTACACACACTTTAG
TGATAAAGTGAAAATCTATTTAAGTTTTTTGTTTTGTTTTCTATTTTGCTACTTAATAAA
AAAATCTATGTTAAATGTTATTTTAGCAATTTATATAAAATATAATTAATTAATAAATAA
ATAGTGCATTAACAGGAGAATCAGTCAATTTAAGTTTTGATACACTGGTAAAATAATGTG
CATTTGCAATCGAAGAACATAAAGGAAATTAAACTGAAGACAACTTTAAAGTAATCCCTC
ATAAATCTAAATAGTTGAACTGCTTTGATAAAATGAAAGAAATTTCAGAAAAGTTCTTTA
AAATGATAACTCCTTCGAAAAAAAACAAATAGATATCTAAAATAGATAGTACTAAATAAA
GTAAGCCAGATGATGCTGTAGTACAATAGTAATTATAAGAACTAAATAATAACATGGGTG
TGTAATAGCAGATGTAAGAAATTAATCATGAAAAAGAATAATCTAAAAGTGTTTTAAATG
AAACAAACGAAACCTAGTAATGA