Identifiers and Description

Gene Model Identifier

TTHERM_00431230

Standard Name

RAB53 (RAB GTPase 53)

Aliases

PreTt26464 | 48.m00227 | 3831.m01567

Description

Novel Rab family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622

Molecular Function

• GTP binding (IEA) | GO:0005525

Biological Process

• small GTPase mediated signal transduction (IEA) | GO:0007264

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 11.6%

TetraMine Data

TTHERM_00431230

WebApollo

Fullscreen View

Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_04156.1	1.999002769139511e-37	hypothetical protein (347 aa)
WormBase	WBGene00016344	3.9983110956465888e-22	locus:tag-312 Ras and EF-han d domain-containing protein ho molog status:Partially_confi rmed UniProt:Q22908 protei n_id:CCD66473.1
Oxytricha	Contig9955.0.g63	2.0002795641672355e-21	Ras family
SGD	YFL038C	4.999245259173412e-21	YPT1 Rab family GTPase, involv ed in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by prote in geranylgeranyltransferase t ype II (Bet2p-Bet4p)
DictyBase	DDB_G0276399	1.9991095569230066e-20	rab8B on chromosome: 2 positio n 6878753 to 6879364
Stentor Coeruleus	SteCoe_24985	0.0000000001026187963170189

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00431230(coding)
ATGAGTCATATTTAAATGAATTAAAATGAATCTAATTAAAAGAAAAATATGAAAATATCA
ATTATGATATGCGGCAACTAAGCAGTAGGAAAAACTTCAATAATTGGATATTATATCAAT
GGTTCCTTTAAAAATAAGTATAATGTTACCCCATAGTGTGAATATAGCATAAAAAATGAA
ACCATTGATTAAGAAAATGTTAATGTTTAAATGATAGATGCACCTGGAATGCTAAATGTA
ATTGATATAACAAGACAACAAATTAGGTCAGCTGATGGATATATATTTGTTTATGATATT
TATGATCACGAATCATTTAAGAATATTGATATATGGGTATAATAGATCTAATAACATAAG
AGTGAGTTCGAAAAGTGTAAGTGCTTGCTAATTGGAAATAAGGTAGATACAAGGAAAAAT
CCTTCTGAAGGTATTAGCTATGAAAAAGGTTAGGAGAAAGCAAAAAACTTTAATATGAAT
TTCTTTGAAACATCAGCTAAAGAAGGAACAAGTATAGTAAGTGCTATTAGAGGTTTAGCA
ATTAATATTTATCACTAAAAAAAGGATTGTATTTTAAAGTAATAGAATATCTTACAGGAG
TAATAAAAAATATCAGGGAGCTCAAATGATTTAAATATTGATGAAAAATTCTTACTCAAT
AATAGTAGAAATCGATAGCCTAAAAAAAATTGTTGGTAGAAATTTAAATCTTGTTTTTGA

>TTHERM_00431230(protein)
MSHIQMNQNESNQKKNMKISIMICGNQAVGKTSIIGYYINGSFKNKYNVTPQCEYSIKNE
TIDQENVNVQMIDAPGMLNVIDITRQQIRSADGYIFVYDIYDHESFKNIDIWVQQIQQHK
SEFEKCKCLLIGNKVDTRKNPSEGISYEKGQEKAKNFNMNFFETSAKEGTSIVSAIRGLA
INIYHQKKDCILKQQNILQEQQKISGSSNDLNIDEKFLLNNSRNRQPKKNCWQKFKSCF

>TTHERM_00431230(gene)
ATGAGTCATATTTAAATGAATTAAAATGAATCTAATTAAAAGAAAAATATGAAAATATCA
ATTATGATATGCGGCAACTAAGCAGTAGGAAAAACTTCAATAATTGGATATTATATCAAT
GGTTCCTTTAAAAATAAGTATAATGTTACCCCATAGTGTGAATATAGCATAAAAAATGAA
ACCATTGATTAAGAAAATGTTAATGTTTAAATGATAGATGCACCTGGAATGCTAAATGTA
ATTGATATAACAAGACAACAAATTAGGTCAGCTGATGGATATATATTTGTTTATGATATT
TATGATCACGAATCATTTAAGAATATTGATATATGGGTATAATAGATCTAATAACATAAG
AGTGAGTTCGAAAAGTGTAAGTGCTTGCTAATTGGAAATAAGGTAGATACAAGGAAAAAT
CCTTCTGAAGGTATTAGCTATGAAAAAGGTTAGGAGAAAGCAAAAAACTTTAATATGAAT
TTCTTTGAAACATCAGCTAAAGAAGGAACAAGTATAGTAAGTGCTATTAGAGGTTTAGCA
ATTAATATTTATCACTAAAAAAAGGATTGTATTTTAAAGTAATAGAATATCTTACAGGAG
TAATAAAAAATATCAGGGAGCTCAAATGATTTAAATATTGATGAAAAATTCTTACTCAAT
AATAGTAGAAATCGATAGCCTAAAAAAAATTGTTGGTAGAAATTTAAATCTTGTTTTTGA