Identifiers and Description

Gene Model Identifier

TTHERM_01407950

Standard Name

RAB43 (RAB GTPase 43)

Aliases

PreTt19979 | 372.m00017

Description

RAB43 Rab-family small GTPase RabX2B; Novel Rab family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• GTP binding (IEA) | GO:0005525

Biological Process

• small GTPase mediated signal transduction (IEA) | GO:0007264

Domains

• ( PF00071 ) Ras family
• ( PF08477 ) Miro-like protein
• ( TIGR00231 ) small GTP-binding protein domain

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 14.9%

TetraMine Data

TTHERM_01407950

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_08464.1	2.998800627344286e-26	hypothetical protein (171 aa)
Oxytricha	Contig15751.0.0.g87	1.9999391735788327e-19	Ras family
WormBase	WBGene00004267	7.001446474249442e-19	locus:rab-3 Ras-related prot ein Rab-3 status:Confirmed UniProt:Q94986 protein_id:C CD65021.1
DictyBase	DDB_G0271736	6.997351175151406e-18	rabC on chromosome: 2 position 718547 to 719569
SGD	YLR262C	9.997764199084386e-16	YPT6 Rab family GTPase, Ras-li ke GTP binding protein involve d in the secretory pathway, re quired for fusion of endosome- derived vesicles with the late Golgi, maturation of the vacu olar carboxypeptidase Y; has s imilarity to the human GTPase, Rab6

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_01407950(coding)
ATGCTTAATAAACTTTTATTTTGTATCTATTTGAAAAAAAATATTTAATTTATTATAAAT
ATATATTTTTATTTTATTAAAATTTGCTTAGATTGCCTGTAAAAAAGTAAAATGAAATAA
GACTTACAAACTAAAGAAATCTTACTAAAAATCTTTATAGATGGTGGGCCCTAGATTGGA
AAATAAACTTTGGCTAAGCGATTTATTGATGATGAATTTATTTAATTGACATAATTGCAT
AAACTTTTAGATTTTAATATCTACAGAACAGAATATTATAATTAAAAGTTGAAAATAAAG
ATCTTTTCTTTTAGATAGCATCTTTGTAGATATGAACTAGTAATTAAAAAGCTTCATTAA
GACTCTAATACTCTTATTTTTGCTTATGATATCACAAAAAGAGAGTCATTTGATGACTTA
CAAGAAAGAATACAAACATTTATGTCATAATAATTTTCAAAAAATATGATTGTTTTTCTT
ATAGGACTAAAGAAAGATCTATCCGATTAAAGATAGGTATCAAAAAATGAAGCAAAATAA
ATTGCTGACTCATTTGGGATGCATTTTTTTGAAATCTCCTCTAAATAGAATATTAATATA
TTTGAAATGTTTGATCTTGCAATAAGAGAATCTTTAGATAAATTTTATTTATTTAAAAAT
CTATGA

>TTHERM_01407950(protein)
MLNKLLFCIYLKKNIQFIINIYFYFIKICLDCLQKSKMKQDLQTKEILLKIFIDGGPQIG
KQTLAKRFIDDEFIQLTQLHKLLDFNIYRTEYYNQKLKIKIFSFRQHLCRYELVIKKLHQ
DSNTLIFAYDITKRESFDDLQERIQTFMSQQFSKNMIVFLIGLKKDLSDQRQVSKNEAKQ
IADSFGMHFFEISSKQNINIFEMFDLAIRESLDKFYLFKNL

>TTHERM_01407950(gene)
ATGCTTAATAAACTTTTATTTTGTATCTATTTGAAAAAAAATATTTAATTTATTATAAAT
ATATATTTTTATTTTATTAAAATTTGCTTAGATTGCCTGTAAAAAAGTAAAATGAAATAA
GACTTACAAACTAAAGAAATCTTACTAAAAATCTTTATAGATGGTGGGCCCTAGATTGGA
AAATAAACTTTGGCTAAGCGATTTATTGATGATGAATTTATTTAATTGACATAATTGCAT
AAACTTTTAGATTTTAATATCTACAGAACAGAATATGTAAGAATAGTTATTATTAATTAA
TCTTGAATGTAAGTATTTATTATATTTTTATTTATTTAGTATAATTAAAAGTTGAAAATA
AAGATCTTTTCTTTTAGATAGCATCTTTGTAGATATGAACTAGTAATTAAAAAGCTTCAT
TAAGACTCTAATACTCTTATTTTTGCTTATGATATCACAAAAAGAGAGTCATTTGATGAC
TTACAAGAAAGAATACAAACATTTATGTCATAATAATTTTCAAAAAATATGATTGTTTTT
CTTATAGGACTAAAGAAAGATCTATCCGATTAAAGATAGGTATCAAAAAATGAAGCAAAA
TAAATTGCTGACTCATTTGGGATGCATTTTTTTGAAATCTCCTCTAAATAGAATATTAAT
ATATTTGAAATGTTTGATCTTGCAATAAGAGAATCTTTAGATAAATTTTATTTATTTAAA
AATCTATGA