Identifiers and Description

Gene Model Identifier

TTHERM_01407960

Standard Name

RAB42 (RAB GTPase 42)

Aliases

PreTt19980 | 372.m00018

Description

RAB42 Rab-family small GTPase RabX2B; Novel Rab family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• GTP binding (IEA) | GO:0005525

Biological Process

• small GTPase mediated signal transduction (IEA) | GO:0007264

Domains

• ( PF00071 ) Ras family
• ( PF08477 ) Miro-like protein
• ( TIGR00231 ) small GTP-binding protein domain

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 12%

TetraMine Data

TTHERM_01407960

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_41009.1	9.995528898049344e-31	hypothetical protein (178 aa)
Oxytricha	Contig15751.0.0.g87	2.000620012690291e-23	Ras family
DictyBase	DDB_G0272138	4.999245259173412e-21	rab2B on chromosome: 2 positio n 1483407 to 1484594
WormBase	WBGene00004267	9.997019043202629e-21	locus:rab-3 Ras-related prot ein Rab-3 status:Confirmed UniProt:Q94986 protein_id:C CD65021.1
SGD	YFL038C	9.99946582325553e-18	YPT1 Rab family GTPase, involv ed in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by prote in geranylgeranyltransferase t ype II (Bet2p-Bet4p)

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_01407960(coding)
ATGAAATAAAACTTACAAACTAAAGAAATATTACTAAAAATCTTTATTGATGGTGAGCCC
TTGATTGGAAAATAAACTTTAATTAAGCGATTTATTGATGATGAATTTGTTTAATTGAAT
TATATGGATAAACTTTTAGATTTTAATATCTACAAAACAGAATAATATAATTAAAAGTTG
AAAATAATGATCTTTTCTTATAGATAGCAAGGTTGTAGATTTAAAGTAGTAACTAAGTAG
TATCATTAAGACTCTACTACTCATATTTTTGCTTATGATATCACAAACAGAGACTCTTTT
GATATTTTACAGGAAAGAATACAATCATTCATGAAATAAGAATTTTCAAAAAATATGATT
GTTTTTCTTATAGGACTAAAGAAAGATCTATCTGATTAAAGATAGGTATAAATAAATGAA
GCAAAATAGATTGCTGACTCATTTGGGATGAATTTTTTTGAAATCTCTTCTAAATAGAGG
ATTAATGTATTTGAAATGTTCGATCTTGCAATAAGAGAATCTCTAGAAAGATTTTATTTA
TAAAAGAATCCATGA

>TTHERM_01407960(protein)
MKQNLQTKEILLKIFIDGEPLIGKQTLIKRFIDDEFVQLNYMDKLLDFNIYKTEQYNQKL
KIMIFSYRQQGCRFKVVTKQYHQDSTTHIFAYDITNRDSFDILQERIQSFMKQEFSKNMI
VFLIGLKKDLSDQRQVQINEAKQIADSFGMNFFEISSKQRINVFEMFDLAIRESLERFYL
QKNP

>TTHERM_01407960(gene)
ATGAAATAAAACTTACAAACTAAAGAAATATTACTAAAAATCTTTATTGATGGTGAGCCC
TTGATTGGAAAATAAACTTTAATTAAGCGATTTATTGATGATGAATTTGTTTAATTGAAT
TATATGGATAAACTTTTAGATTTTAATATCTACAAAACAGAATAAGTAAGAATATTTATT
AGTAATCTTGAATATAAGTATTATATTAAGTATTTATTTAGTATAATTAAAAGTTGAAAA
TAATGATCTTTTCTTATAGATAGCAAGGTTGTAGATTTAAAGTAGTAACTAAGTAGTATC
ATTAAGACTCTACTACTCATATTTTTGCTTATGATATCACAAACAGAGACTCTTTTGATA
TTTTACAGGAAAGAATACAATCATTCATGAAATAAGAATTTTCAAAAAATATGATTGTTT
TTCTTATAGGACTAAAGAAAGATCTATCTGATTAAAGATAGGTATAAATAAATGAAGCAA
AATAGATTGCTGACTCATTTGGGATGAATTTTTTTGAAATCTCTTCTAAATAGAGGATTA
ATGTATTTGAAATGTTCGATCTTGCAATAAGAGAATCTCTAGAAAGATTTTATTTATAAA
AGAATCCATGA