Identifiers and Description

Gene Model Identifier

TTHERM_01407960

Standard Name

RAB42

Aliases

PreTt19980 | 372.m00018

Description

Novel Rab family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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Gene Ontology Annotations

Molecular Function

Biological Process

Domains

Gene Expression Profile

  • Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 12%

TetraMine Data

TTHERM_01407960

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

SourceIdentifierScoreDescription
Tetrahymena borealisEI9_41009.19.995528898049344e-31hypothetical protein (178 aa)
OxytrichaContig15751.0.0.g872.000620012690291e-23Ras family
DictyBaseDDB_G02721384.999245259173412e-21rab2B on chromosome: 2 positio
n 1483407 to 1484594
WormBaseWBGene000042679.997019043202629e-21locus:rab-3 Ras-related prot
ein Rab-3 status:Confirmed
UniProt:Q94986 protein_id:C
CD65021.1
SGDYFL038C9.99946582325553e-18YPT1 Rab family GTPase, involv
ed in the ER-to-Golgi step of
the secretory pathway; complex
formation with the Rab escort
protein Mrs6p is required for
prenylation of Ypt1p by prote
in geranylgeranyltransferase t
ype II (Bet2p-Bet4p)

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_01407960(coding)
ATGAAATAAAACTTACAAACTAAAGAAATATTACTAAAAATCTTTATTGATGGTGAGCCC
TTGATTGGAAAATAAACTTTAATTAAGCGATTTATTGATGATGAATTTGTTTAATTGAAT
TATATGGATAAACTTTTAGATTTTAATATCTACAAAACAGAATAATATAATTAAAAGTTG
AAAATAATGATCTTTTCTTATAGATAGCAAGGTTGTAGATTTAAAGTAGTAACTAAGTAG
TATCATTAAGACTCTACTACTCATATTTTTGCTTATGATATCACAAACAGAGACTCTTTT
GATATTTTACAGGAAAGAATACAATCATTCATGAAATAAGAATTTTCAAAAAATATGATT
GTTTTTCTTATAGGACTAAAGAAAGATCTATCTGATTAAAGATAGGTATAAATAAATGAA
GCAAAATAGATTGCTGACTCATTTGGGATGAATTTTTTTGAAATCTCTTCTAAATAGAGG
ATTAATGTATTTGAAATGTTCGATCTTGCAATAAGAGAATCTCTAGAAAGATTTTATTTA
TAAAAGAATCCATGA


>TTHERM_01407960(protein)
MKQNLQTKEILLKIFIDGEPLIGKQTLIKRFIDDEFVQLNYMDKLLDFNIYKTEQYNQKL
KIMIFSYRQQGCRFKVVTKQYHQDSTTHIFAYDITNRDSFDILQERIQSFMKQEFSKNMI
VFLIGLKKDLSDQRQVQINEAKQIADSFGMNFFEISSKQRINVFEMFDLAIRESLERFYL
QKNP


>TTHERM_01407960(gene)
TTATTTTATTATAATTAATTTGTTTAGATTTTCTTTAAAAAAGTAAAATGAAATAAAACT
TACAAACTAAAGAAATATTACTAAAAATCTTTATTGATGGTGAGCCCTTGATTGGAAAAT
AAACTTTAATTAAGCGATTTATTGATGATGAATTTGTTTAATTGAATTATATGGATAAAC
TTTTAGATTTTAATATCTACAAAACAGAATAAGTAAGAATATTTATTAGTAATCTTGAAT
ATAAGTATTATATTAAGTATTTATTTAGTATAATTAAAAGTTGAAAATAATGATCTTTTC
TTATAGATAGCAAGGTTGTAGATTTAAAGTAGTAACTAAGTAGTATCATTAAGACTCTAC
TACTCATATTTTTGCTTATGATATCACAAACAGAGACTCTTTTGATATTTTACAGGAAAG
AATACAATCATTCATGAAATAAGAATTTTCAAAAAATATGATTGTTTTTCTTATAGGACT
AAAGAAAGATCTATCTGATTAAAGATAGGTATAAATAAATGAAGCAAAATAGATTGCTGA
CTCATTTGGGATGAATTTTTTTGAAATCTCTTCTAAATAGAGGATTAATGTATTTGAAAT
GTTCGATCTTGCAATAAGAGAATCTCTAGAAAGATTTTATTTATAAAAGAATCCATGAAA
TTATAAGTACATTTTTTTACTAAATTTGAAATAGTTAACAAATTTATTTTTTTTTAAATT
TTAATAAAAATAAAATACATAGATAGATATATACAAAGCTTTTATAACTTAGCTAAAAAC
TATTACTTAGATTAGAAGTATATTTCAATTTAAAGACAGACTGGTCTGAAACGAAATC