Identifiers and Description

Gene Model Identifier

TTHERM_00066880

Standard Name

RAB40

Aliases

PreTt13178 | 4.m00577 | 3707.m00215

Description

Novel Rab family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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Gene Ontology Annotations

Cellular Component

Molecular Function

Biological Process

Domains

  • ( PF00071 ) Ras family
  • ( PF08477 ) Miro-like protein
  • ( PF01926 ) GTPase of unknown function
  • ( PF00025 ) ADP-ribosylation factor family
  • ( TIGR00231 ) small GTP-binding protein domain
  • ( PF03029 ) Conserved hypothetical ATP binding protein

Gene Expression Profile

  • Tetrahymena Functional Genomics Database:

TetraMine Data

TTHERM_00066880

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

SourceIdentifierScoreDescription
Tetrahymena borealisEI9_02088.12.0000211193600847e-137Ras family protein (232 aa)
DictyBaseDDB_G02763991.9997255150861791e-53rab8B on chromosome: 2 positio
n 6878753 to 6879364
OxytrichaContig22392.0.g294.999934616708877e-52Ras family
WormBaseWBGene000042729.998397555368434e-52locus:rab-8 status:Confirmed
UniProt:G5EFC1 protein_id
:CCD68351.1
SGDYFL038C4.000139296874041e-45YPT1 Rab family GTPase, involv
ed in the ER-to-Golgi step of
the secretory pathway; complex
formation with the Rab escort
protein Mrs6p is required for
prenylation of Ypt1p by prote
in geranylgeranyltransferase t
ype II (Bet2p-Bet4p)
Stentor CoeruleusSteCoe_249854.780892883885469e-25

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00066880(coding)
ATGCACTAGAAAGAATCAAAAAAAGATATTGTAGCAAAAGTTTTAGTCATAGGAGAAGCA
AAAGTTGGTAAAACATCTATATTGACAAGATATACAGAAGGGTCTTTTCAAGAAAGCATG
ATTCCTACCTTAGGTATAGATTATAGATTTAAGAAATTATTTGTCAAAGGGTAGGAAATA
AAGCTTTAGATTTGGGATACTGCTGGCTAGGAGAGATTCAGAGCTATTACTTAAAATTTC
TATAAAGGAGCGATGGGAATTATTTTAGTTTTTGACTTAACTGATCCTAAAACTTTTAAA
ACTCTTTCAAACTGGATCGAAAATATTAAATAATATTCTGGATCAGAAGCATGTAGAATT
CTCCTTGGAAACAAATGTGATATATCTTAAAATTAAATTCCAAAGCAAGACATATAAAAT
TTGGCAAATTAAAATAAAATTTAGTACTTTGAAACATCAGCAAAAAGTAACGAAGGCATA
TAGTAGGCTTTTTAGTAGATAGCAGATGACATAGCGAATAAATTCTTTAGCGAGTTAATA
AATATATAATCCGACCAAAAATTAGACTTAGACAACTCTTTAATAAGGTCTCCATCTTCG
ATAAAAAGGGAAGAGTAGCAATAAGCACTTTAACTATAAGTATAAAAAAGTCCTAGAAAG
AAAACTGAATCAGAAAGCTGCTGTTCATGA


>TTHERM_00066880(protein)
MHQKESKKDIVAKVLVIGEAKVGKTSILTRYTEGSFQESMIPTLGIDYRFKKLFVKGQEI
KLQIWDTAGQERFRAITQNFYKGAMGIILVFDLTDPKTFKTLSNWIENIKQYSGSEACRI
LLGNKCDISQNQIPKQDIQNLANQNKIQYFETSAKSNEGIQQAFQQIADDIANKFFSELI
NIQSDQKLDLDNSLIRSPSSIKREEQQQALQLQVQKSPRKKTESESCCS


>TTHERM_00066880(gene)
AAATTTAAGATTTTTGTTTTTAATTTTTATACAATTAAAAAATCATCAATAATCAATTTC
GAAGTAGCAAACGAAAAAGTTGAAATTTTTCTTAATTCAAGAAGCCGCTTATTAGTAAAT
AAGCCAATTTAAAGTTACATAGTTGGTTGGTATCTTAAAGTAAACGTAATAATGCACTAG
AAAGAATCAAAAAAAGATATTGTAGCAAAAGTTTTAGTCATAGGAGAAGCAAAAGTTGGT
AAAACATCTATATTGACAAGATATACAGAAGGGTCTTTTCAAGAAAGCATGATTCCTACC
TTAGGTAATATTGAAATGAAAATAGCTAAAATTTTAAGGAAATAATATTCATTATTTACA
ATTAGTGCTAGCTAGCTTGCACTCCTGATTAAATATTTCTTATATATTTATTTTAAAATA
GGTATAGATTATAGATTTAAGAAATTATTTGTCAAAGGGTAGGAAATAAAGCTTTAGATT
TGGGATACTGCTGGCTAGGAGAGATTCAGAGCTATTACTTAAAATTTCTATAAAGGAGCG
ATGGGAATTATTTTAGTTTTTGACTTAACTGATCCTAAAACTTTTAAAACTCTTTCAAAC
TGGATCGAAAATATTAAATAATATTCTGGATCAGAAGCATGTAGAATTCTCCTTGGAAAC
AAATGTGATATATCTTAAAATTAAATTCCAAAGCAAGACATATAAAATTTGGCAAATTAA
AATAAAATTTAGTACTTTGAAACATCAGCAAAAAGTAACGAAGGCATATAGTAGGCTTTT
TAGTAGATAGCAGATGACATAGCGAATAAATTCTTTAGCGAGTTAATAAATATATAATCC
GACCAAAAATTAGACTTAGACAACTCTTTAATAAGGTCTCCATCTTCGATAAAAAGGGAA
GAGTAGCAATAAGCACTTTAACTATAAGTATAAAAAAGTCCTAGAAAGAAAACTGAATCA
GAAAGCTGCTGTTCATGA