Identifiers and Description

Gene Model Identifier

TTHERM_00419740

Standard Name

RAB1D

Aliases

PreTt07104 | 46.m00159 | 3679.m00009

Description

Rab I family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622

Molecular Function

• GTP binding (IEA) | GO:0005525

Biological Process

• small GTPase mediated signal transduction (IEA) | GO:0007264

Domains

• ( PF00071 ) Ras family
• ( PF08477 ) Miro-like protein
• ( PF00735 ) Cell division protein
• ( PF01926 ) GTPase of unknown function
• ( PF00025 ) ADP-ribosylation factor family
• ( TIGR00231 ) small GTP-binding protein domain
• ( PF03029 ) Conserved hypothetical ATP binding protein

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.4%

TetraMine Data

TTHERM_00419740

WebApollo

Fullscreen View

Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_11087.1	4.997910161537908e-106	Ras family protein (211 aa)
Oxytricha	Contig15751.0.0.g87	6.998463833652622e-61	Ras family
WormBase	WBGene00004272	4.001202823045957e-54	locus:rab-8 status:Confirmed UniProt:G5EFC1 protein_id :CCD68351.1
SGD	YGL210W	6.001502944943701e-53	YPT32 Rab family GTPase, very similar to Ypt31p; involved in the exocytic pathway; mediate s intra-Golgi traffic or the b udding of post-Golgi vesicles from the trans-Golgi
DictyBase	DDB_G0277867	9.998397555368434e-52	rab1B on chromosome: 3 positio n 743092 to 744234
Stentor Coeruleus	SteCoe_25677	1.185064864233981e-27

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00419740(coding)
ATGTCTCTTTAACAAGATTACGATTATGCATTTAAAATTGCTATTACTGGAAGCTCATCA
GTCGGTAAAAGTTCTTTGATGATGAGATTTACAGACGATGTATTTAATGTAGTACTCATT
CCTACTATTGGCGTTGACTTTAAAATTCGTTCATTTACTGTAGACAACAAAATAGTAAAG
CTTAATATTTGGGATACAGCTGGTTAAGAAAGATTTGATGCTATAATTAAGGCTTATTAC
AAGGGAATACATGCATGTTTAATTGTATTTGATTTAACAGATCGTCAAACATTCCAAGAT
GTTTATAAGTGGTTTGATAAGTGTAAACAAAATGCCAAAAATGAAGTTAAATTAATTTTA
GTAGGTAATAAAGCTGATCTGGAAGAATAAAGAGCAGTGACTTATGAAGAAGCATGTAAT
CTCGCTTAGGAACTAGATATGTAATATATTGAAACTTCTGCTAAATCAAAATAAAATGTA
GATCAATGCTTTATTTAATTGAGTCAAGACCTCATTTAGTAATATATAAAATAAAACAAA
TAAATTTAATTTGAAACATAAAAATAAAAATCTCATCTTAAGCCTGGTGGTGCTACTATT
TAAAAATAATAATAAAAATCAGCATAATGCTGCTGA

>TTHERM_00419740(protein)
MSLQQDYDYAFKIAITGSSSVGKSSLMMRFTDDVFNVVLIPTIGVDFKIRSFTVDNKIVK
LNIWDTAGQERFDAIIKAYYKGIHACLIVFDLTDRQTFQDVYKWFDKCKQNAKNEVKLIL
VGNKADLEEQRAVTYEEACNLAQELDMQYIETSAKSKQNVDQCFIQLSQDLIQQYIKQNK
QIQFETQKQKSHLKPGGATIQKQQQKSAQCC

>TTHERM_00419740(gene)
ATGTCTCTTTAACAAGATTACGATTATGCATTTAAAATTGCTATTACTGGAAGCTCATCA
GTCGGTAAAAGTTCTTTGATGATGAGATTTACAGACGATGTATTTAATGTAGTACTCATT
CCTACTATTGGCGTTGACTTTAAAATTCGTTCATTTACTGTAGACAACAAAATAGTAAAG
CTTAATATTTGGGATACAGCTGGTTAAGAAAGATTTGATGCTATAATTAAGGCTTATTAC
AAGGGAATACATGCATGTTTAATTGTATTTGATTTAACAGATCGTCAAACATTCCAAGAT
GTTTATAAGTGGTTTGATAAGTGTAAACAAAATGCCAAAAATGAAGTTAAATTAATTTTA
GTAGGTAATAAAGCTGATCTGGAAGAATAAAGAGCAGTGACTTATGAAGAAGCATGTAAT
CTCGCTTAGGAACTAGATATGTAATATATTGAAACTTCTGCTAAATCAAAATAAAATGTA
GATCAATGCTTTATTTAATTGAGTCAAGACCTCATTTAGTAATATATAAAATAAAACAAA
TAAATTTAATTTGAAACATAAAAATAAAAATCTCATCTTAAGCCTGGTGGTGCTACTATT
TAAAAATAATAATAAAAATCAGCATAATGCTGCTGA