Identifiers and Description

Gene Model Identifier

TTHERM_00825210

Standard Name

RAB1C

Aliases

PreTt03985 | 142.m00082 | 3683.m00015

Description

Rab I family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622

Molecular Function

• GTP binding (IEA) | GO:0005525

Biological Process

• small GTPase mediated signal transduction (IEA) | GO:0007264

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 12.2%

TetraMine Data

TTHERM_00825210

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_18305.1	1.999382702437002e-145	Ras family protein (212 aa)
WormBase	WBGene00004266	2.999277470785175e-69	locus:rab-1 status:Confirmed UniProt:Q9UAQ6 protein_id :CCD67094.1
Oxytricha	Contig15751.0.0.g87	3.0005221502158484e-68	Ras family
SGD	YFL038C	2.0009381340492598e-66	YPT1 Rab family GTPase, involv ed in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by prote in geranylgeranyltransferase t ype II (Bet2p-Bet4p)
DictyBase	DDB_G0277867	5.999140071902665e-66	rab1B on chromosome: 3 positio n 743092 to 744234
Stentor Coeruleus	SteCoe_28651	1.462486227251231e-31

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00825210(coding)
ATGATTAAAGATTACGACCATTTATTCAAGCTCGTCATTATCGGAAATAGCGGTGTTGGC
AAATCTTCTTTATTGCTTAGATTTAGTGACGATCAATTTAACGAAAGCTATTTAACCACA
ATTGGTGTTGATTTTAGATTCCGTACTCTTCCTATTGATTAAAAGTAAGTTAAGCTTTAG
ATTTGGGATACTGCTGGTTAAGAACGTTTCAGAACAATTACTTCTGCATATTATAAGGGT
GCTGATGGTATTGTTATGGTTTACGATGTCACATCTGAAAATTCTTTCTAAGATATTGAT
AAATTTTGGATTAGCGAAGTAGAAAGCTACGCTGAAAAGAATGTTGAATTACTTCTCATT
GGTAATAAGAGCGACCTTGAAAAACAAGTTTCAACTCAAACAGCTTAAGAATACGCTAAA
TCAAAAAATATGGAATTCTTTGAATGTTCTGCTAAAACATCAGATTCTGTCTAGTAAGCT
TTTCTTACCTTAGCTCGTAAGCTTATGAATAAAAAAGAATAATTAAATAAGCCTAAGTAA
TACGCTCCTTAAGGTGGATCTACTCAACCTCGTTAAAATCAAAGTCTCTCTAATAGAAAC
AATGTTTAGAAGCAAGATAAGGGTTGCTGTTGA

>TTHERM_00825210(protein)
MIKDYDHLFKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQ
IWDTAGQERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLI
GNKSDLEKQVSTQTAQEYAKSKNMEFFECSAKTSDSVQQAFLTLARKLMNKKEQLNKPKQ
YAPQGGSTQPRQNQSLSNRNNVQKQDKGCC

>TTHERM_00825210(gene)
ATGATTAAAGATTACGACCATTTATTCAAGCTCGTCATTATCGGAAATAGCGGTGTTGGC
AAATCTTCTTTATTGCTTAGATTTAGTGACGATCAATTTAACGAAAGCTATTTAACCACA
ATTGGTGTTGATTTTAGATTCCGTACTCTTCCTATTGATTAAAAGTAAGTTAAGCTTTAG
ATTTGGGATACTGCTGGTTAAGAACGTTTCAGAACAATTACTTCTGCATATTATAAGGGT
GCTGATGGTATTGTTATGGTTTACGATGTCACATCTGAAAATTCTTTCTAAGATATTGAT
AAATTTTGGATTAGCGAAGTAGAAAGCTACGCTGAAAAGAATGTTGAATTACTTCTCATT
GGTAATAAGAGCGACCTTGAAAAACAAGTTTCAACTCAAACAGCTTAAGAATACGCTAAA
TCAAAAAATATGGAATTCTTTGAATGTTCTGCTAAAACATCAGATTCTGTCTAGTAAGCT
TTTCTTACCTTAGCTCGTAAGCTTATGAATAAAAAAGAATAATTAAATAAGCCTAAGTAA
TACGCTCCTTAAGGTGGATCTACTCAACCTCGTTAAAATCAAAGTCTCTCTAATAGAAAC
AATGTTTAGAAGCAAGATAAGGGTTGCTGTTGA