Identifiers and Description

Gene Model Identifier

TTHERM_00126950

Standard Name

RAB13A (RAB GTPase 13A)

Aliases

PreTt09358 | 9.m00580 | 3699.m00088

Description

RAB13A Ras family small GTPase; Rab VIII family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622

Molecular Function

• GTP binding (IEA) | GO:0005525

Biological Process

• small GTPase mediated signal transduction (IEA) | GO:0007264

Domains

• ( PF00071 ) Ras family
• ( PF08477 ) Miro-like protein
• ( PF01926 ) GTPase of unknown function
• ( PF00025 ) ADP-ribosylation factor family
• ( TIGR00231 ) small GTP-binding protein domain
• ( PF00009 ) Elongation factor Tu GTP binding

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 15%

TetraMine Data

TTHERM_00126950

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_09114.1	9.99668353155528e-144	Ras family protein (210 aa)
Oxytricha	Contig15751.0.0.g87	6.002203762674495e-72	Ras family
DictyBase	DDB_G0280043	9.995417076252815e-72	rab8A on chromosome: 3 positio n 3266503 to 3267523
WormBase	WBGene00004272	2.999277470785175e-69	locus:rab-8 status:Confirmed UniProt:G5EFC1 protein_id :CCD68351.1
SGD	YFL038C	1.9997677415930956e-65	YPT1 Rab family GTPase, involv ed in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by prote in geranylgeranyltransferase t ype II (Bet2p-Bet4p)
Stentor Coeruleus	SteCoe_11143	7.281290178321643e-33

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00126950(protein)
MQRPKDTEYDWIFKLLIIGDSGVGKTNLLLRFCDDKFATSHLATMGIDFKSKKIEIDGKK
IKLQVWDTAGQERFRQITQNYYKGAMGVIMTYSINDKESFRNIEVWMKQIRQQASVNIAK
LLVGNKCDMESERQVTFEEGKSLADTFGIKFFETSAKSDINVTEAFFTICKEIQEKININ
PEPKSESPFTLKQEQNNNGKNTGRTCC

>TTHERM_00126950(coding)
ATGTAAAGACCAAAAGATACCGAATACGATTGGATATTTAAGTTACTTATTATTGGTGAT
TCTGGTGTAGGAAAAACTAATCTTTTATTAAGATTTTGCGATGATAAATTTGCTACCTCG
CATTTAGCAACTATGGGTATTGACTTTAAATCCAAAAAGATAGAAATTGATGGCAAAAAA
ATAAAATTACAAGTTTGGGATACTGCTGGCTAAGAAAGATTTAGATAAATCACATAAAAT
TATTATAAAGGAGCTATGGGCGTTATTATGACCTACTCAATAAATGATAAAGAATCCTTC
AGAAATATTGAAGTTTGGATGAAACAAATCAGATAATAAGCAAGTGTAAACATTGCAAAA
TTACTAGTAGGTAATAAATGCGATATGGAATCCGAAAGACAAGTAACATTTGAAGAAGGT
AAATCCCTCGCAGACACATTCGGAATTAAATTTTTCGAAACCTCTGCAAAATCTGATATA
AATGTAACTGAGGCTTTCTTCACTATTTGTAAGGAAATTTAAGAAAAAATTAATATCAAC
CCAGAACCAAAGAGTGAATCTCCATTTACTCTAAAATAAGAATAGAACAATAATGGTAAA
AACACTGGAAGAACATGCTGTTGA

>TTHERM_00126950(gene)
ATGTAAAGACCAAAAGATACCGAATACGATTGGATATTTAAGTTACTTATTATTGGTGAT
TCTGGTGTAGGAAAAACTAATCTTTTATTAAGATTTTGCGATGATAAATTTGCTACCTCG
CATTTAGCAACTATGGGTAAAATTATTTAAGAAATTCACATTAGCAATTTGAAATAAAAA
ACGATTATTGCAAAAATTATTTAATACCCATTTTAAAATGTTTATTTGATGGCTTCATCT
AATTTATTTAATTTGAGCCAAAAGAATTTTGCGTATTTTGTTCAACTTTAACTAATGAAA
AAATAAATGATCGATCTCATAATTAATTTTAACTAAAAAGGTATTGACTTTAAATCCAAA
AAGATAGAAATTGATGGCAAAAAAATAAAATTACAAGTTTGGGATACTGCTGGCTAAGAA
AGATTTAGATAAATCACATAAAATTATTATAAAGGAGCTATGGGCGTTATTATGACCTAC
TCAATAAATGATAAAGAATCCTTCAGAAATATTGAAGTTTGGATGAAACAAATCAGATAA
TAAGCAAGTGTAAACATTGCAAAATTACTAGTAGGTAATAAATGCGATATGGAATCCGAA
AGACAAGTAACATTTGAAGAAGGTAAATCCCTCGCAGACACATTCGGAATTAAATTTTTC
GAAACCTCTGCAAAATCTGATATAAATGTAACTGAGGCTTTCTTCACTATTTGTAAGGAA
ATTTAAGAAAAAATTAATATCAACCCAGAACCAAAGAGTGAATCTCCATTTACTCTAAAA
TAAGAATAGAACAATAATGGTAAAAACACTGGAAGAACATGCTGTTGA