Identifiers and Description

Gene Model Identifier

TTHERM_00126950

Standard Name

RAB13A (RAB GTPase 13A)

Aliases

PreTt09358 | 9.m00580 | 3699.m00088

Description

Rab VIII family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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Gene Ontology Annotations

Cellular Component

Molecular Function

Biological Process

Domains

  • ( PF00071 ) Ras family
  • ( PF08477 ) Miro-like protein
  • ( PF01926 ) GTPase of unknown function
  • ( PF00025 ) ADP-ribosylation factor family
  • ( TIGR00231 ) small GTP-binding protein domain
  • ( PF00009 ) Elongation factor Tu GTP binding

Gene Expression Profile

  • Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 15%

TetraMine Data

TTHERM_00126950

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

SourceIdentifierScoreDescription
Tetrahymena borealisEI9_09114.19.99668353155528e-144Ras family protein (210 aa)
OxytrichaContig15751.0.0.g876.002203762674495e-72Ras family
DictyBaseDDB_G02800439.995417076252815e-72rab8A on chromosome: 3 positio
n 3266503 to 3267523
WormBaseWBGene000042722.999277470785175e-69locus:rab-8 status:Confirmed
UniProt:G5EFC1 protein_id
:CCD68351.1
SGDYFL038C1.9997677415930956e-65YPT1 Rab family GTPase, involv
ed in the ER-to-Golgi step of
the secretory pathway; complex
formation with the Rab escort
protein Mrs6p is required for
prenylation of Ypt1p by prote
in geranylgeranyltransferase t
ype II (Bet2p-Bet4p)
Stentor CoeruleusSteCoe_111437.281290178321643e-33

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00126950(protein)
MQRPKDTEYDWIFKLLIIGDSGVGKTNLLLRFCDDKFATSHLATMGIDFKSKKIEIDGKK
IKLQVWDTAGQERFRQITQNYYKGAMGVIMTYSINDKESFRNIEVWMKQIRQQASVNIAK
LLVGNKCDMESERQVTFEEGKSLADTFGIKFFETSAKSDINVTEAFFTICKEIQEKININ
PEPKSESPFTLKQEQNNNGKNTGRTCC


>TTHERM_00126950(coding)
ATGTAAAGACCAAAAGATACCGAATACGATTGGATATTTAAGTTACTTATTATTGGTGAT
TCTGGTGTAGGAAAAACTAATCTTTTATTAAGATTTTGCGATGATAAATTTGCTACCTCG
CATTTAGCAACTATGGGTATTGACTTTAAATCCAAAAAGATAGAAATTGATGGCAAAAAA
ATAAAATTACAAGTTTGGGATACTGCTGGCTAAGAAAGATTTAGATAAATCACATAAAAT
TATTATAAAGGAGCTATGGGCGTTATTATGACCTACTCAATAAATGATAAAGAATCCTTC
AGAAATATTGAAGTTTGGATGAAACAAATCAGATAATAAGCAAGTGTAAACATTGCAAAA
TTACTAGTAGGTAATAAATGCGATATGGAATCCGAAAGACAAGTAACATTTGAAGAAGGT
AAATCCCTCGCAGACACATTCGGAATTAAATTTTTCGAAACCTCTGCAAAATCTGATATA
AATGTAACTGAGGCTTTCTTCACTATTTGTAAGGAAATTTAAGAAAAAATTAATATCAAC
CCAGAACCAAAGAGTGAATCTCCATTTACTCTAAAATAAGAATAGAACAATAATGGTAAA
AACACTGGAAGAACATGCTGTTGA


>TTHERM_00126950(gene)
ATGTAAAGACCAAAAGATACCGAATACGATTGGATATTTAAGTTACTTATTATTGGTGAT
TCTGGTGTAGGAAAAACTAATCTTTTATTAAGATTTTGCGATGATAAATTTGCTACCTCG
CATTTAGCAACTATGGGTAAAATTATTTAAGAAATTCACATTAGCAATTTGAAATAAAAA
ACGATTATTGCAAAAATTATTTAATACCCATTTTAAAATGTTTATTTGATGGCTTCATCT
AATTTATTTAATTTGAGCCAAAAGAATTTTGCGTATTTTGTTCAACTTTAACTAATGAAA
AAATAAATGATCGATCTCATAATTAATTTTAACTAAAAAGGTATTGACTTTAAATCCAAA
AAGATAGAAATTGATGGCAAAAAAATAAAATTACAAGTTTGGGATACTGCTGGCTAAGAA
AGATTTAGATAAATCACATAAAATTATTATAAAGGAGCTATGGGCGTTATTATGACCTAC
TCAATAAATGATAAAGAATCCTTCAGAAATATTGAAGTTTGGATGAAACAAATCAGATAA
TAAGCAAGTGTAAACATTGCAAAATTACTAGTAGGTAATAAATGCGATATGGAATCCGAA
AGACAAGTAACATTTGAAGAAGGTAAATCCCTCGCAGACACATTCGGAATTAAATTTTTC
GAAACCTCTGCAAAATCTGATATAAATGTAACTGAGGCTTTCTTCACTATTTGTAAGGAA
ATTTAAGAAAAAATTAATATCAACCCAGAACCAAAGAGTGAATCTCCATTTACTCTAAAA
TAAGAATAGAACAATAATGGTAAAAACACTGGAAGAACATGCTGTTGA