Identifiers and Description

Gene Model Identifier

TTHERM_00471070

Standard Name

RAB11D

Aliases

PreTt22521 | 56.m00225 | 3686.m00068

Description

Rab II family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622

Molecular Function

• GTP binding (IEA) | GO:0005525

Biological Process

• small GTPase mediated signal transduction (IEA) | GO:0007264

Domains

• ( PF00071 ) Ras family
• ( PF00350 ) Dynamin family
• ( PF08477 ) Miro-like protein
• ( TIGR00152 ) dephospho-CoA kinase
• ( PF01926 ) GTPase of unknown function
• ( PF00025 ) ADP-ribosylation factor family
• ( TIGR00231 ) small GTP-binding protein domain
• ( PF00009 ) Elongation factor Tu GTP binding

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10%

TetraMine Data

TTHERM_00471070

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_11333.1	2.0006597401342834e-129	Ras family protein (226 aa)
Oxytricha	Contig16926.0.g71	1.0002758036576784e-62	Ras family
SGD	YER031C	7.997312755134699e-60	YPT31 Rab family GTPase, very similar to Ypt32p; involved in the exocytic pathway; mediate s intra-Golgi traffic or the b udding of post-Golgi vesicles from the trans-Golgi
WormBase	WBGene00004274	2.9997246065828143e-59	locus:rab-11.1 status:Confir med UniProt:O01803 protein _id:CCD71701.1
DictyBase	DDB_G0269238	2.0004062814618821e-57	rab11A on chromosome: 1 positi on 4269122 to 4270264
Stentor Coeruleus	SteCoe_27326	1.185064864233981e-27

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00471070(coding)
ATGGCTTCGTTATCGTTAAAAGAAACTGAAGTGTAACTAGATTACTAGTTTAAAATATTA
TTGATAGGTGACAGTGGAGTAGGAAAAACTTCAATTATGAATAGATTCACTGAAAATAAA
TTTAATGTTGAAATAAAATCAACAATAGGAGTTGAATATAGTAAAAAAACTATGGTTATT
GATTAAGCTGTTATTTAAGCCTCTATTTGGGATACTGCCGGATAAGAAAGATTTAGATCT
TTAGCTAAAAATTATTACAAAGGTGCTATAGGTGCTTTATTAGTTTTTGATGTTACAAGA
CCACATACTCTCGAAAATATTTAAAAGATATGGCTCTAAGAAGTCGAATAGCATGCATCA
AAAAATATTAAAATGATTTTAATTGGAAACAAGAGCGATTTAACTGTAGAGCGTATTGTA
AAATAGGAAGAAGCAGTTAATTTCTCCAAAACAAATAACCTAGCTTATATGGAAACATCT
GCATTAAACAATTAAAATATTGATTAGGCATTTGAGACTCTCGTAAGAGAAATATACAGT
GAAATCAATTCACTCCCTTCTGAAATCCGTCCTAAAAACTTAACATAGCGTAAAGAGCAT
ACTCCCTAAGTTAATTAAAACAATAACTTACAGATTGACAAGAAAAATATTAAAAAGAAA
AGAGCATGTTGTGAATGA

>TTHERM_00471070(protein)
MASLSLKETEVQLDYQFKILLIGDSGVGKTSIMNRFTENKFNVEIKSTIGVEYSKKTMVI
DQAVIQASIWDTAGQERFRSLAKNYYKGAIGALLVFDVTRPHTLENIQKIWLQEVEQHAS
KNIKMILIGNKSDLTVERIVKQEEAVNFSKTNNLAYMETSALNNQNIDQAFETLVREIYS
EINSLPSEIRPKNLTQRKEHTPQVNQNNNLQIDKKNIKKKRACCE

>TTHERM_00471070(gene)
ATGGCTTCGTTATCGTTAAAAGAAACTGAAGTGTAACTAGATTACTAGTTTAAAATATTA
TTGATAGGTGACAGTGGAGTAGGAAAAACTTCAATTATGAATAGATTCACTGAAAATAAA
TTTAATGTTGAAATAAAATCAACAATAGGAGTTGAATATAGTAAAAAAACTATGGTTATT
GATTAAGCTGTTATTTAAGCCTCTATTTGGGATACTGCCGGATAAGAAAGATTTAGATCT
TTAGCTAAAAATTATTACAAAGGTGCTATAGGTGCTTTATTAGTTTTTGATGTTACAAGA
CCACATACTCTCGAAAATATTTAAAAGATATGGCTCTAAGAAGTCGAATAGCATGCATCA
AAAAATATTAAAATGATTTTAATTGGAAACAAGAGCGATTTAACTGTAGAGCGTATTGTA
AAATAGGAAGAAGCAGTTAATTTCTCCAAAACAAATAACCTAGCTTATATGGAAACATCT
GCATTAAACAATTAAAATATTGATTAGGCATTTGAGACTCTCGTAAGAGGTAAATTTTAC
TTTCAAAATAAAATATCTCTTATAAAAAAAGCAGGAAAAAAAATATATTTTAAGTTAATT
GTATTTATTTTCTTAAATTATAATGTTAGCTTTGAAAAATAAATGATTTTATAATTTTAT
CTCCTTTTTATAAGAAAATTATCTAAACTTACAAGCTATTAAAAATATTAATTCATCATA
AACTCTTTCAAAACAAACAAACATACAAAATAAAATATTATTATTATTTTTAAAAATAGA
AATATACAGTGAAATCAATTCACTCCCTTCTGAAATCCGTCCTAAAAACTTAACATAGCG
TAAAGAGCATACTCCCTAAGTTAATTAAAACAATAACTTACAGATTGACAAGAAAAATAT
TAAAAAGAAAAGAGCATGTTGTGAATGA