Identifiers and Description

Gene Model Identifier

TTHERM_00941540

Standard Name

RAB11B (RAB GTPase 11B)

Aliases

PreTt25160 | 171.m00077

Description

Rab II family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

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Genome Browser (Micronucleus)

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Gene Ontology Annotations

Cellular Component

Molecular Function

Biological Process

Domains

Gene Expression Profile

  • Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 11.1%

TetraMine Data

TTHERM_00941540

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

SourceIdentifierScoreDescription
Tetrahymena borealisEI9_19607.14.0007306071632746e-129Ras-like protein Rab11A (213 a
a)
WormBaseWBGene000042745.0014751778710277e-85locus:rab-11.1 status:Confir
med UniProt:O01803 protein
_id:CCD71701.1
DictyBaseDDB_G02692389.999776257620412e-83rab11A on chromosome: 1 positi
on 4269122 to 4270264
OxytrichaContig16926.0.g714.000392704867155e-81Ras family
SGDYER031C6.00277790667473e-79YPT31 Rab family GTPase, very
similar to Ypt32p; involved in
the exocytic pathway; mediate
s intra-Golgi traffic or the b
udding of post-Golgi vesicles
from the trans-Golgi
Stentor CoeruleusSteCoe_179806.639677199580735e-36

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00941540(coding)
ATGGCATCAAAGAACGAAGACGAATACGATTTCCTTTTTAAGATTGTTCTAATAGGTGAT
TCTGGCGTAGGAAAAACCAACTTGCTATCAAGATTTACTAAAAATGAATTCAATATGGAT
TCAAAGCCAACAATCGGTGTAGAATTTGCCACTAAAACAGTTATTACAGAAAATAAATAC
ATAAAAGCACAAATTTGGGACACTGCAGGTTAAGAAAAATACAGAGCTATTACTAACGCA
TATTATAGAGGAGCTGTTGGTGCTCTCACCCTTTATGATATTACAAAGCAATAGACATTT
GACAATGTAAAAAAGTGGTTACATGAACTCAGAGAATATGCCGATGCTAATATTATTTGT
ATGCTTATTGGTAATAAATGCGATTTGTAAGAAATGAGATAAGTAAAGACAGAAGATGCT
GCTAAATTTGCAGAAGAAAATAACCTTGCATTTATGGAAACATCTGCTGCCTAAGCTATA
AATGTAGATTAAGCCTTTTAAAAACTCATCACAGAAATATATAATAATTTGAAGACAAGA
CCTAATGAAGAAAAAAAAAAGGCATAACCATAATAAAATGGAAATAATATAATTAAAGAT
TTTAAGCAACCCACCTAAGCAGAAAAAGAAAAAAAATGTTGTTGA


>TTHERM_00941540(protein)
MASKNEDEYDFLFKIVLIGDSGVGKTNLLSRFTKNEFNMDSKPTIGVEFATKTVITENKY
IKAQIWDTAGQEKYRAITNAYYRGAVGALTLYDITKQQTFDNVKKWLHELREYADANIIC
MLIGNKCDLQEMRQVKTEDAAKFAEENNLAFMETSAAQAINVDQAFQKLITEIYNNLKTR
PNEEKKKAQPQQNGNNIIKDFKQPTQAEKEKKCC


>TTHERM_00941540(gene)
ATGGCATCAAAGAACGAAGACGAATACGATTTCCTTTTTAAGATTGTTCTAATAGGTAAT
CTTTATTCAAGTTATTTTAAAAAAGGATCTATTATTCAGCATACCTATCGGAATTTTTTG
ATTGAATATATTTATCAATCTATCTACTCTTTATACTAATTCATATTTATAGTCCTTTTC
GCAAACATAAATCATAAGAATTAATTTAATTCAAAAATTGCTAATCTTTTTTTCTTGTAT
TCATTTTAGGTGATTCTGGCGTAGGAAAAACCAACTTGCTATCAAGATTTACTAAAAATG
AATTCAATATGGATTCAAAGCCAACAATCGGTGTAGAATTTGCCACTAAAACAGTTATTA
CAGAAAATAAATACATAAAAGCACAAATTTGGGACACTGCAGGTTAAGAAAAATACAGAG
CTATTACTAACGCATATTATAGAGGAGCTGTTGGTGCTCTCACCCTTTATGATATTACAA
AGCAATAGACATTTGACAATGTAAAAAAGTGGTTACATGAACTCAGAGAATATGCCGATG
CTAATATTATTTGTATGCTTATTGGTAATAAATGCGATTTGTAAGAAATGAGATAAGTAA
AGACAGAAGATGCTGCTAAATTTGCAGAAGAAAATAACCTTGCATTTATGGAAACATCTG
CTGCCTAAGCTATAAATGTAGATTAAGCCTTTTAAAAACTCATCACAGGTAAATATAAAC
TATTCTTTTAAATTCTGAGAGGCTTTATTTTGAAAAACCCATTCAAAAATTTCCTTCAAC
CAAGGCTAAACCTACCAAAAATGAATTTTATTTTAATTTTAAAATATCACTTTTGAAATA
AAGCCGCATCAAGCTAAGCTTTGAAACAATTGAATTCATAAATATTTTTTTCCTTATAAA
ATAAAAACTAAAATGATTTCTTACTATAAAATAGAAATATATAATAATTTGAAGACAAGA
CCTAATGAAGAAAAAAAAAAGGCATAACCATAATAAAATGGAAATAATATAATTAAAGAT
TTTAAGCAACCCACCTAAGCAGAAAAAGAAAAAAAATGTTGTTGA