Identifiers and Description

Gene Model Identifier

TTHERM_00941540

Standard Name

RAB11B

Aliases

PreTt25160 | 171.m00077

Description

Rab II family protein; small monomeric GTPase that regulates membrane fusion and fission events

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• intracellular (IEA) | GO:0005622

Molecular Function

• GTP binding (IEA) | GO:0005525

Biological Process

• small GTPase mediated signal transduction (IEA) | GO:0007264

Domains

• ( PF00071 ) Ras family
• ( PF08477 ) Miro-like protein
• ( PF01926 ) GTPase of unknown function
• ( PF00025 ) ADP-ribosylation factor family
• ( TIGR00231 ) small GTP-binding protein domain

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 11.1%

TetraMine Data

TTHERM_00941540

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_19607.1	4.0007306071632746e-129	Ras-like protein Rab11A (213 a a)
WormBase	WBGene00004274	5.0014751778710277e-85	locus:rab-11.1 status:Confir med UniProt:O01803 protein _id:CCD71701.1
DictyBase	DDB_G0269238	9.999776257620412e-83	rab11A on chromosome: 1 positi on 4269122 to 4270264
Oxytricha	Contig16926.0.g71	4.000392704867155e-81	Ras family
SGD	YER031C	6.00277790667473e-79	YPT31 Rab family GTPase, very similar to Ypt32p; involved in the exocytic pathway; mediate s intra-Golgi traffic or the b udding of post-Golgi vesicles from the trans-Golgi
Stentor Coeruleus	SteCoe_17980	6.639677199580735e-36

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00941540(coding)
ATGGCATCAAAGAACGAAGACGAATACGATTTCCTTTTTAAGATTGTTCTAATAGGTGAT
TCTGGCGTAGGAAAAACCAACTTGCTATCAAGATTTACTAAAAATGAATTCAATATGGAT
TCAAAGCCAACAATCGGTGTAGAATTTGCCACTAAAACAGTTATTACAGAAAATAAATAC
ATAAAAGCACAAATTTGGGACACTGCAGGTTAAGAAAAATACAGAGCTATTACTAACGCA
TATTATAGAGGAGCTGTTGGTGCTCTCACCCTTTATGATATTACAAAGCAATAGACATTT
GACAATGTAAAAAAGTGGTTACATGAACTCAGAGAATATGCCGATGCTAATATTATTTGT
ATGCTTATTGGTAATAAATGCGATTTGTAAGAAATGAGATAAGTAAAGACAGAAGATGCT
GCTAAATTTGCAGAAGAAAATAACCTTGCATTTATGGAAACATCTGCTGCCTAAGCTATA
AATGTAGATTAAGCCTTTTAAAAACTCATCACAGAAATATATAATAATTTGAAGACAAGA
CCTAATGAAGAAAAAAAAAAGGCATAACCATAATAAAATGGAAATAATATAATTAAAGAT
TTTAAGCAACCCACCTAAGCAGAAAAAGAAAAAAAATGTTGTTGA

>TTHERM_00941540(protein)
MASKNEDEYDFLFKIVLIGDSGVGKTNLLSRFTKNEFNMDSKPTIGVEFATKTVITENKY
IKAQIWDTAGQEKYRAITNAYYRGAVGALTLYDITKQQTFDNVKKWLHELREYADANIIC
MLIGNKCDLQEMRQVKTEDAAKFAEENNLAFMETSAAQAINVDQAFQKLITEIYNNLKTR
PNEEKKKAQPQQNGNNIIKDFKQPTQAEKEKKCC

>TTHERM_00941540(gene)
ATGGCATCAAAGAACGAAGACGAATACGATTTCCTTTTTAAGATTGTTCTAATAGGTAAT
CTTTATTCAAGTTATTTTAAAAAAGGATCTATTATTCAGCATACCTATCGGAATTTTTTG
ATTGAATATATTTATCAATCTATCTACTCTTTATACTAATTCATATTTATAGTCCTTTTC
GCAAACATAAATCATAAGAATTAATTTAATTCAAAAATTGCTAATCTTTTTTTCTTGTAT
TCATTTTAGGTGATTCTGGCGTAGGAAAAACCAACTTGCTATCAAGATTTACTAAAAATG
AATTCAATATGGATTCAAAGCCAACAATCGGTGTAGAATTTGCCACTAAAACAGTTATTA
CAGAAAATAAATACATAAAAGCACAAATTTGGGACACTGCAGGTTAAGAAAAATACAGAG
CTATTACTAACGCATATTATAGAGGAGCTGTTGGTGCTCTCACCCTTTATGATATTACAA
AGCAATAGACATTTGACAATGTAAAAAAGTGGTTACATGAACTCAGAGAATATGCCGATG
CTAATATTATTTGTATGCTTATTGGTAATAAATGCGATTTGTAAGAAATGAGATAAGTAA
AGACAGAAGATGCTGCTAAATTTGCAGAAGAAAATAACCTTGCATTTATGGAAACATCTG
CTGCCTAAGCTATAAATGTAGATTAAGCCTTTTAAAAACTCATCACAGGTAAATATAAAC
TATTCTTTTAAATTCTGAGAGGCTTTATTTTGAAAAACCCATTCAAAAATTTCCTTCAAC
CAAGGCTAAACCTACCAAAAATGAATTTTATTTTAATTTTAAAATATCACTTTTGAAATA
AAGCCGCATCAAGCTAAGCTTTGAAACAATTGAATTCATAAATATTTTTTTCCTTATAAA
ATAAAAACTAAAATGATTTCTTACTATAAAATAGAAATATATAATAATTTGAAGACAAGA
CCTAATGAAGAAAAAAAAAAGGCATAACCATAATAAAATGGAAATAATATAATTAAAGAT
TTTAAGCAACCCACCTAAGCAGAAAAAGAAAAAAAATGTTGTTGA