Identifiers and Description

Gene Model Identifier

TTHERM_00525150

Standard Name

PRP2 (Pre-mRNA Processing factor 2)

Aliases

PreTt06352 | 66.m00151 | 3722.m00010

Description

U2 snRNP auxilliary factor; splicing factor

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• macronucleus (IDA) | GO:0031039 | Ref:SUPR000274

Biological Process

• regulation of mRNA splicing, via spliceosome (IDA) | GO:0048024 | Ref:SUPR000274

Domains

• ( TIGR01622 ) splicing factor, CC1-like family
• ( PF00076 ) RNA recognition motif. (a.k.a. RRM,
• ( TIGR01642 ) U2 snRNP auxilliary factor, large

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.8%

TetraMine Data

TTHERM_00525150

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_13363.1	9.997093137033517e-262	U2 snRNP auxilliary factor, sp licing factor (473 aa)
Oxytricha	Contig20715.0.g17	3.000458792073453e-56	RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
WormBase	WBGene00006697	6.000354955737408e-39	locus:uaf-1 status:Confirmed UniProt:Q8MXS2 protein_id :CCD62281.1
DictyBase	DDB_G0286395	4.998978211117678e-38	u2af2 on chromosome: 4 positio n 4405482 to 4407497
Stentor Coeruleus	SteCoe_4228	4.780892883885469e-25
SGD	YIR005W	0.0005997485943342685	IST3 Component of the U2 snRNP , required for the first catal ytic step of splicing and for spliceosomal assembly; interac ts with Rds3p and is required for Mer1p-activated splicing

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00525150(coding)
ATGGATATCGAAATTAATTAACTATAATATAATAATCAATAAGGAGAGGAGTTTAAGTAA
GCTGAAGAATAAATAATTGAATAGGATCATAGAAAATATTCTAGTGATGAAGAAGAGGAA
GATGATGAAGATATCATATAAAAATAAAAAAACGAATCTATCAAAGATGAGAATACTACA
TAAATAAGCAATTAAGATGGAGGAGATGGCTAAAAATAAAAGAAGAAGAAGAAAAAGAAA
AGAAAAAGAGACTTACCTGAAGAGGAGGAAACTGATTATGAAGTAGATATTGTCAAAAAA
GCTAAAACATCAAAATTATTACTTTGTGAAGCAATTCAAGATCATTTAAGATAAAGATAT
GCATTAATAGAAGCCAACCCTTGGTTATTAATTGTATCTGATATACCAAGAATGATTACA
GATATTGAAATTAAGGAGTTCTTCAATATTCTAATTTCTAAATTAAGACCAGAACTAGCT
GAACCCTCACCTGTTGTAAAAGTAGATGTTATGACCAATGGATAATTTGCTACTATGCAT
ATGAGTTGTAAATTGGCCAAAAGCTTTGCTCTTACTTTAAGGGGTGTTGAATTCTAAAAA
TGCAAATTGATGATAGAAAAACCCAAGCAATACTTTTTTAGGATGTATATGGAGAAATAA
TAAAATGATGATGTTATGGTAGATGTAGATGATGGTGCTTTGTAGCAAATGCAAATGAAT
AAAATTTATATGGGTGGTTTGCCTACTTATTTAAAAGACATAGATGTTAGAAAATTATGT
GAAACCTTTGGCAAATTAAAATACTTTAATGTAGCAAAACAATAAAATGAAAATAAAGAG
CAAGTTTCTAAAGGTTACTGTTTTTTTGAATACGAAGATCCAAATATCACTGAGAAAGCT
ATTAAAGCACTTAATGGTCTACCTTGTGGTGATAGAAAGTTAAAAGTTTCTAGAGTCACA
AAAGATCAAAATAAACTTGCAAATACACAATAAATTTAAAGTGAAAAAAACAAATTAGCT
CCTTCTAATAATAGTGGTAGTTTTCTAGGAGGTTCTGATTTAATTAGAAAAGACGAATTT
TAAAAGTTATTAACTATTCCGGAATTTACTTCTCTTCCAAGTAGAGTTATTCAATTATTA
AATATGGTGTCAATTGAAGATCTATTTGAAGATGACATTGTAGATGATTTATATTAAGAT
GTTATGACAGAATGCGAGAAAATAGGACCAGTTGAGAAAATAGAAATCCCAAAGCCATGC
AAAACTACAGGCATATGCCCTCCATGCATAGGAAAAGTTTTTGTTAAATTTAAATATATG
TTGAAGGCAAAGAAGGCAAGATATAGTTTGAATGGAAGAACATATAATCGTAGAACAGTA
ATAGCTTCATTTTATCCTGAGGATAAGTTTGATCGCAAAGATTTTCTTGTTTCTATTTTG
TGA

>TTHERM_00525150(protein)
MDIEINQLQYNNQQGEEFKQAEEQIIEQDHRKYSSDEEEEDDEDIIQKQKNESIKDENTT
QISNQDGGDGQKQKKKKKKKRKRDLPEEEETDYEVDIVKKAKTSKLLLCEAIQDHLRQRY
ALIEANPWLLIVSDIPRMITDIEIKEFFNILISKLRPELAEPSPVVKVDVMTNGQFATMH
MSCKLAKSFALTLRGVEFQKCKLMIEKPKQYFFRMYMEKQQNDDVMVDVDDGALQQMQMN
KIYMGGLPTYLKDIDVRKLCETFGKLKYFNVAKQQNENKEQVSKGYCFFEYEDPNITEKA
IKALNGLPCGDRKLKVSRVTKDQNKLANTQQIQSEKNKLAPSNNSGSFLGGSDLIRKDEF
QKLLTIPEFTSLPSRVIQLLNMVSIEDLFEDDIVDDLYQDVMTECEKIGPVEKIEIPKPC
KTTGICPPCIGKVFVKFKYMLKAKKARYSLNGRTYNRRTVIASFYPEDKFDRKDFLVSIL

>TTHERM_00525150(gene)
ATGGATATCGAAATTAATTAACTATAATATAATAATCAATAAGGAGAGGAGTTTAAGTAA
GCTGAAGAATAAATAATTGAATAGGATCATAGAAAATATTCTAGTGATGAAGAAGAGGAA
GATGATGAAGATATCATATAAAAATAAAAAAACGAATCTATCAAAGATGAGAATACTACA
TAAATAAGCAATTAAGATGGAGGAGATGGCTAAAAATAAAAGAAGAAGAAGAAAAAGAAA
AGAAAAAGAGACTTACCTGAAGAGGAGGAAACTGATTATGAAGTAGATATTGTCAAAAAA
GCTAAAACATCAAAATTATTACTTTGTGAAGCAATTCAAGATCATTTAAGATAAAGATAT
GCATTAATAGAAGCCAACCCTTGGTTATTAATTGTATCTGATATACCAAGAATGATTACA
GATATTGAAATTAAGGAGTTCTTCAATATTCTAATTTCTAAATTAAGACCAGAACTAGCT
GAACCCTCACCTGTTGTAAAAGTAGATGTTATGACCAATGGATAATTTGCTACTATGCAT
ATGAGTTGTAAATTGGCCAAAAGCTTTGCTCTTACTTTAAGGGGTGTTGAATTCTAAAAA
TGCGTAAAAATTATGATTAAAAGAAAATTTTAGAAATAAAAGAGAGAATTTATAATAAAA
TCAAGCAAAAATAAATCTTTTCAATAAAAAATATTTTTTCAAATCTAAAAAAGTGATAGA
AACACATAAATTTATAATTATAATTAATTTTATAAATAACTTCTTTTAGTTAAAAATATT
AGCTTGATTTTGTTAACTTTTTCTTCAAAAAATCTACATTTTCTTTTGAAAATGATATTA
TTTTCAAGATAAAGATTGAAATTTATTTTTAAAACATTTATTTAATTTCATATATTTTTT
ATAATATAGAAATTGATGATAGAAAAACCCAAGCAATACTTTTTTAGGATGTATATGGAG
AAATAATAAAATGATGATGTTATGGTAGATGTAGATGATGGTGCTTTGTAGCAAATGCAA
ATGAATAAAATTTATATGGGTGGTTTGCCTACTTATTTAAAAGACATAGATGTTAGAAAA
TTATGTGAAACCTTTGGCAAATTAAAATACTTTAATGTAGCAAAACAATAAAATGAAAAT
AAAGAGCAAGTTTCTAAAGGTTACTGTTTTTTTGAATACGAAGATCCAAATATCACTGAG
AAAGCTATTAAAGCACTTAATGGTCTACCTTGTGGTGATAGAAAGTTAAAAGTTTCTAGA
GTCACAAAAGATCAAAATAAACTTGCAAATACACAATAAATTTAAAGTGAAAAAAACAAA
TTAGCTCCTTCTAATAATGTAAATTGAATTCAAACATATTTTTTTATTTTAAAAACTCGT
ATAAAATAGAGTGGTAGTTTTCTAGGAGGTTCTGATTTAATTAGAAAAGACGAATTTTAA
AAGTTATTAACTATTCCGGAATTTACTTCTCTTCCAAGTAGAGTTATTCAATTATTAAAT
ATGGTGTCAATTGAAGATCTATTTGAAGATGACATTGTAGATGATTTATATTAAGATGTT
ATGACAGAATGCGAGAAAATAGGACCAGTTGAGAAAATAGAAATCCCAAAGCCATGCAAA
ACTACAGGCATATGCCCTCCATGCATAGGAAAAGTTTTTGTTAAATTTAAGTAAATTTTT
ATATCATTAAAATTATAAATTTCTAAATATCATTTGAGGTTTTTAAAGGAAATTTCTAAG
AACTTTTTATAAATAAAAAATTAAAATATATTTTTTATTTACAAAGATATATGTTGAAGG
CAAAGAAGGCAAGATATAGTTTGAATGGAAGAACATATAATCGTAGAACAGTAATAGCTT
CATTTTATCCTGAGGATAAGTTTGATCGCAAAGATTTTCTTGTTTCTATTTTGTGA