Identifiers and Description

Gene Model Identifier

TTHERM_00637170

Standard Name

PRP18 (Pre-mRNA-splicing factor PRP18)

Aliases

PreTt19720 | 91.m00135

Description

Pre-mRNA-splicing factor

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• spliceosomal complex (IEA) | GO:0005681

Biological Process

• RNA splicing (IEA) | GO:0008380

Domains

• ( PF02840 ) Prp18 domain
• ( PF00123 ) Peptide hormone
• ( PF04081 ) DNA polymerase delta, subunit 4
• ( PF08799 ) pre-mRNA processing factor 4 (PRP4)

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.3%

TetraMine Data

TTHERM_00637170

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_03535.1	9.997093137033517e-262	Prp18 domain-containing protei n (375 aa)
DictyBase	DDB_G0274555	1.0000099287337047e-53	prp18 on chromosome: 2 positio n 4164827 to 4165996
Oxytricha	Contig7183.0.g74	1.9998745702418095e-48	Prp18 domain
WormBase	WBGene00009320	1.9994920269952867e-34	status:Confirmed UniProt:O45 431 protein_id:CAB03039.2
SGD	YGR006W	0.0000000000000030004923591262316	PRP18 Splicing factor involved in the positioning of the 3 s plice site during the second c atalytic step of splicing, par t of snRNP U5, interacts with Slu7p
Stentor Coeruleus	SteCoe_33148	0.000045399929762484854

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00637170(coding)
ATGGATTCTTTGAAAAATATTTTAGCAAAAAAAAAGGAAACGGTTTAAAAGCAAGGATAG
GTTGTTAAAAAAGCTGACTTAGAAAAGGAAAGAGAAGAGAATTACTGGAAATAATAGGCT
GAAATACAAAAATAGGAAGAATTAAGAAAATAATAATATTTGGAAGATTTGCAAAAATAT
TAAGCTAATCCTTACAAAAAATTAAAGAAAGATGAAAAAAAGGATGAAGGTTAGTAAAAT
GAAAACAAAGAAGAAGAATAGCCTCCTATACCTAAAGCAGAAGTCATTAAAAAATTGAGA
TAATTTGGAGTTCCTGTAACTTTTTTTGGTGAAACTGATTAACAAAGATACAAAAGATTA
AAAAAACTAGAACTTGATGCTACTGAAAATAAAAATTAGGGTGGTAACGTCTATGATAAA
ATTTTAAAAATGAATGAGGAAGACTTCAAAAAGAAATAAAGAGAGGAAGCTGATTATATT
GATGAAGAAAAAATTTAAAAACTTTTTGCAAGGTTAAACTAACCAGAATAAAATATTAGT
ACTGAAAAGGTAACTAATAAAAAGCAGTAAGAATTAGAAATAGAAAAACTTAAGCAAGTG
TCTAACGATACTAAAAATGAAGATATTTTAATATGGAGTTAAAAAACACTTCGTGATTGG
GAGTAGAAATTAGAATAGAGATTCACAACTGATGAATAGAAAAAATCTGTTTTAGCAAGA
AAATTAATTGGTAATTTCCGTCAAACATCAGAGTACTTGAAACCTTTGTTTAAGCTTTTA
AAAGAAAAGAAATGTAGTTAAGATATTCTAGATGGATTATACATAGTCGTAAATTATGCA
TTATAAAGGGAGTATGTAAAAGCAAATGACAAATATTTAGCCTTAGCTATTGGTAATGCT
GCTTGGCCTATGGGTGTCACAATGGTTGGTATCCACGAAAGAGCTGGTCGTTCCAAAATT
TTTAGTTCTTAAGTTGCACATATATTAAATGATGAAACAACCAGAAAGTATTTGTAATCA
ATGAAGAGACTTGTTACAGTTTAATAGCTTATGTATCCTTCTGAAGATAAAGCTAAGATG
ATAAATTATGACACAACAATGGAGGAGTTATTTTGA

>TTHERM_00637170(protein)
MDSLKNILAKKKETVQKQGQVVKKADLEKEREENYWKQQAEIQKQEELRKQQYLEDLQKY
QANPYKKLKKDEKKDEGQQNENKEEEQPPIPKAEVIKKLRQFGVPVTFFGETDQQRYKRL
KKLELDATENKNQGGNVYDKILKMNEEDFKKKQREEADYIDEEKIQKLFARLNQPEQNIS
TEKVTNKKQQELEIEKLKQVSNDTKNEDILIWSQKTLRDWEQKLEQRFTTDEQKKSVLAR
KLIGNFRQTSEYLKPLFKLLKEKKCSQDILDGLYIVVNYALQREYVKANDKYLALAIGNA
AWPMGVTMVGIHERAGRSKIFSSQVAHILNDETTRKYLQSMKRLVTVQQLMYPSEDKAKM
INYDTTMEELF

>TTHERM_00637170(gene)
ATGGATTCTTTGAAAAATATTTTAGCAAAAAAAAAGGAAACGGTTTAAAAGCAAGGATAG
GTTGTTAAAAAAGCTGACTTAGAAAAGGAAAGAGAAGAGAATTACTGGAAATAATAGGCT
GAAATACAAAAATAGGAAGAATTAAGAAAATAATAATATTTGGAAGATTTGCAAAAATAT
TAAGCTAATCCTTACAAAAAATTAAAGAAAGATGAAAAAAAGGATGAAGGTTAGTAAAAT
GAAAACAAAGAAGAAGAATAGCCTCCTATACCTAAAGCAGAAGTCATTAAAAAATTGAGA
TAATTTGGAGTTCCTGTAACTTTTTTTGGTGAAACTGATTAACAAAGATACAAAAGATTA
AAAAAACTAGAACTTGATGCTACTGAAAATAAAAATTAGGGTGGTAACGTCTATGATAAA
ATTTTAAAAATGAATGAGGAAGACTTCAAAAAGAAATAAAGAGAGGAAGCTGATTATATT
GATGAAGAAAAAATTTAAAAACTTTTTGCAAGGTTAAACTAACCAGAATAAAATATTAGT
ACTGAAAAGGTAACTAATAAAAAGCAGTAAGAATTAGAAATAGAAAAACTTAAGCAAGTG
TCTAACGATACTAAAAATGAAGATATTTTAATATGGAGTTAAAAAACACTTCGTGATTGG
GAGTAGAAATTAGAATAGAGATTCACAACTGATGAATAGAAAAAATCTGTTTTAGCAAGA
AAATTAATTGGTAATTTCCGTCAAACATCAGAGTACTTGAAACCTTTGTTTAAGCTTTTA
AAAGAAAAGAAATGTAGTTAAGATATTCTAGATGGATTATACATAGTCGTAAATTATGCA
TTATAAAGGGAGTATGTAAAAGCAAATGACAAATATTTAGCCTTAGCTATTGGTAATGCT
GCTTGGCCTATGGGTGTCACAATGGTTGGTATCCACGAAAGAGCTGGTCGTTCCAAAATT
TTTAGTTCTTAAGTTGCACGTAAAATTCTATTAAAATAAATTAAAATTTCTTTAAATGAA
AATAATTAATAAAAAAGATATATTAAATGATGAAACAACCAGAAAGTATTTGTAATCAAT
GAAGAGACTTGTTACAGTTTAATAGCTTATGTATCCTTCTGAAGATAAAGCTAAGATGAT
AAATTATGACAGTAAATATTTTTTTAATTTAAATAAAATAATATTAATCTATATTTTAAA
TAATTAGCAACAATGGAGGAGTTATTTTGA