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Identifiers and Description
Gene Model Identifier
TTHERM_00849220Standard Name
PRP1 (Pre-mRNA Processing factor 1)Aliases
PreTt24923 | 149.m00049 | 3750.m00279Description
U4/U6 x U5 tri-snRNP complex subunitGenome Browser (Macronucleus)
Genome Browser (Micronucleus)
Gene Ontology Annotations
Cellular Component
- nucleus (IEA) | GO:0005634
Biological Process
- mRNA splicing, via spliceosome (IEA) | GO:0000398
Domains
No Data fetched for Domains
Gene Expression Profile
- Tetrahymena Functional Genomics Database:
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 10.8%
TetraMine Data
TTHERM_00849220
WebApollo
Fullscreen View
Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_18700.1 9.997093137033517e-262 hypothetical protein (921 aa)
Oxytricha Contig17451.0.g46 6.001048086731027e-152 PRP1 splicing factor, N-termin
al
DictyBase DDB_G0272374 9.997639769646959e-151 prpf6 on chromosome: 2 positio
n 1378065 to 1381252
WormBase WBGene00013343 7.000689681459392e-147 locus:prp-6 status:Confirmed
UniProt:Q9GRZ2 protein_id
:CAC14407.3
SGD YBR055C 7.997908857293895e-55 PRP6 Splicing factor, componen
t of the U4/U6-U5 snRNP comple
x
General Information
No Data fetched for General Information
Associated Literature
No Data fetched for Associated Literature
Sequences
>TTHERM_00849220(coding)
ATGAGTAATAAAAGCTATTACGCTAAAACTGATTTTGGTCCACCTCCTCCAAATTACGTA
GCAGGTTTGGCAAGAGGTGCAGTAGGTTTTATCACTCGTTCAGATATTGGTCCTGCAAAT
TATAGTTCTTATGATTCCTGGAGTGGTTATCAGGAAAATATATTTGCTAATGATAAATAA
GATGATGAAGATAGACAAGCAGAAGAAGAATACAACAAAATTGATAATTTTATGGCAGGT
CGTCGTATTAAATACATAGAAAAAAAATAGTAAGAGGAAGCCAAAAAAAATTTAGAAAAG
AACCCATCTGTAGCATTTTAATTCGCAGATCTTAAGCGTGATTTGGGTGGTATTACTTAT
GATGAATGGAATGCTATTCCTGAAGTCTAAGACTACACTATTAAAAAGAGTAAAAATGAA
AAATACACTCCTGTTCCAGACCATATTATTTAGAGCGCAAGATCGGAAGGTTCATTTAGC
ACTTCTTTAGATGTAACTGGTCTCCAAACTCCTCATAACATCAACGATATTGGTAAAGCC
AACTAGACTATTTTTACTTCAAGATTGGATAAATCTTCAGATCAAGTTAGTGGTATTTCT
ACAGTTGATAAGTCAGGTTACTTAACTAGTTTAAATTCATAACTTGTGAATTCTTCAGCA
GATATTGGTGATTTTAAACGTGCTCGTAATTTGATGAAGAGTTTTGTTAAAACTGATCCG
AAAAATCCAGTTGGTTGGATCAGTGTTGCTCGTGTTGAAGAGTTAGATGGTAAAATTTAG
GAAGCTCGTAATGTTCTTTATTAGGGCTTACCACACTGTGAGACATCTGATGAAATATGG
GTAGAAATAGCTCGTTTAGAAACTCCTGAAAAAGCTCGTGCTCTGCTTGCTAAAGCAGCT
ACTATACTTCCTAAGAGCTTAAAAATTTGGTTAGCAGCTGCAGATTTAGAAAGTAATCGT
GAGATGAAGGTTAAAATTTTAAAGAAAGCACTTGAACATATCCCTGATTAACCAAGACTT
TGGAAGAAGCTTATTGAATACGAAGAAAGCTAAAAGGAAGCAAAAATTCTTCTTTATAAG
GCTGTAGAATGTATTCCTGATGACTTAGATATGTGGTTAGCTCTTGCTAAACTGGAAACA
TACGAAAATGCAAAAGCTGTTTTAAATAAGGCACGTAAAATTCACCCTTAAGAATTGTCA
ATTTGGGTTAACGCTGCTAAATTAGAAGAATCTCAAGGATAACCTTAGGAAACTATCACA
AAGGTGTTATAAAATGCAATCAAATATTTTTCAAGCAAAAATATCAATATTGTAAAAGAA
GACTGGCTAAAAGAAGCAGCATACTGTGAAAAATCAGGAAATTTAAATACTTGTATAGCT
ATTGTTTAAGCTATCGTTCTTCATAACGTTCATGATAAATCTGATAAAGAACGTATCATT
AAGGAAGAAGCAAAGAATATGATTGAAGGAACTTGTATTGGAACAGGACGTGCCATTTAT
GAATTTGGTATTGAAGCACTCAAACCTGACAATATTGACCTTTTTCAAGCAACAATCGAC
TTTGAATAGAATACAGGAAAAGATAAAGATAATCTAAAACGCTTGTACAAGGAAGCTACA
ACTCAGCATCCTAAATATGAGAGTTTTTGGATTTAAAGAATCAAGTTCCATTGGTAAGAA
GCCAACAAAGTCATAGAGTAGGCATAATTATAAAATCACAGCGAAAAAAATATTGAAACT
CCATCTACAGTAGATGAAGAAGCTCAAATGAATTAATAAATTACTGCACAAAAGGCAGAA
ATATAAAAATTGCTCTAAGAATCATAAGAAAATTTACCTGAAAGCTAACAAATCCTTGTC
TTATCTATTAAATATCTTAAGAAGAATGAAGAGATAGATCAAGCAAGGGAATTAGTTTAC
AAAGCAAGAAAAAATAACCCAACACACTAAGTTTACCTTAGTCTACTTAAATTGGAATAT
TAAACAGGTGCTTTACAAAAGGCTTTCTAAGAATCTTAAAATGCAATGGGAGCATTCCCA
AATTGTGAAAAGATATTTATCTTATCTGCTAAAATAGCTTATGCTCATAAATCAATTGAA
TAAGCTCGTTAAGTCTATGAAAAAGGGCTACGTTTTAATCCCATGAGTGTTAGTTTGATT
CAAAAGTATGTAGAACTGGAAATAAATCATAAATACTTTGCTCGTGCTCGTCCTGTTCTT
GAAAAATTCCGTGTTAAGCTCCCCAAAAATCCCGAACTTTGGTGCACTGCAGTATAATTA
GAAATAGAAGCTGAAAATAAAAAAGGAGCTAGATATATGCTAGCCCGTGCTTTAAAGGAG
TGTCCTGATTATACTCAATTATGGTCTTATGCTATCGAATTAGAGCCTAAGGCTACTCGT
AAGAAAAAAACTTCTGAAGCCTTGGAAAAATGTAGATAAGATCCATATGTGAACGTTTCT
GTTGCCAAATTATTTTGGAAAGAACGTAAAATGGATAAAGCACGTAAATGGATTGAGAAA
TCAACCTTTGAAAGACCTGAAATAATGGATTCGTGGGCTGCTCTCTATCTTTTAGTATTA
GAAACTGAAGGCCGTTAATAAGCAGATGAAGTCTTAATTAAGGTTAAGCAATTAGATGTC
CATAGAGAAGGTCGTTTATACTAAAAGATAAAAAAATCAGATGACGGATGGAGATATAGC
TTCGATTAAATATTTATAAAAATAACAGATCAAATAAAAAAAGAACTAAGTAATATAGAG
TGA>TTHERM_00849220(protein)
MSNKSYYAKTDFGPPPPNYVAGLARGAVGFITRSDIGPANYSSYDSWSGYQENIFANDKQ
DDEDRQAEEEYNKIDNFMAGRRIKYIEKKQQEEAKKNLEKNPSVAFQFADLKRDLGGITY
DEWNAIPEVQDYTIKKSKNEKYTPVPDHIIQSARSEGSFSTSLDVTGLQTPHNINDIGKA
NQTIFTSRLDKSSDQVSGISTVDKSGYLTSLNSQLVNSSADIGDFKRARNLMKSFVKTDP
KNPVGWISVARVEELDGKIQEARNVLYQGLPHCETSDEIWVEIARLETPEKARALLAKAA
TILPKSLKIWLAAADLESNREMKVKILKKALEHIPDQPRLWKKLIEYEESQKEAKILLYK
AVECIPDDLDMWLALAKLETYENAKAVLNKARKIHPQELSIWVNAAKLEESQGQPQETIT
KVLQNAIKYFSSKNINIVKEDWLKEAAYCEKSGNLNTCIAIVQAIVLHNVHDKSDKERII
KEEAKNMIEGTCIGTGRAIYEFGIEALKPDNIDLFQATIDFEQNTGKDKDNLKRLYKEAT
TQHPKYESFWIQRIKFHWQEANKVIEQAQLQNHSEKNIETPSTVDEEAQMNQQITAQKAE
IQKLLQESQENLPESQQILVLSIKYLKKNEEIDQARELVYKARKNNPTHQVYLSLLKLEY
QTGALQKAFQESQNAMGAFPNCEKIFILSAKIAYAHKSIEQARQVYEKGLRFNPMSVSLI
QKYVELEINHKYFARARPVLEKFRVKLPKNPELWCTAVQLEIEAENKKGARYMLARALKE
CPDYTQLWSYAIELEPKATRKKKTSEALEKCRQDPYVNVSVAKLFWKERKMDKARKWIEK
STFERPEIMDSWAALYLLVLETEGRQQADEVLIKVKQLDVHREGRLYQKIKKSDDGWRYS
FDQIFIKITDQIKKELSNIE>TTHERM_00849220(gene)
ATGAGTAATAAAAGCTATTACGCTAAAACTGATTTTGGTCCACCTCCTCCAAATTACGTA
GCAGGTTTGGCAAGAGGTGCAGTAGGTTTTATCACTCGTTCAGATATTGGTCCTGCAAAT
TATAGTTCTTATGATTCCTGGAGTGGTTATCAGGAAAATATATTTGCTAATGATAAATAA
GATGATGAAGATAGACAAGCAGAAGAAGAATACAACAAAATTGATAATTTTATGGCAGGT
CGTCGTATTAAATACATAGAAAAAAAATAGTAAGAGGAAGCCAAAAAAAATTTAGAAAAG
AACCCATCTGTAGCATTTTAATTCGCAGATCTTAAGCGTGATTTGGGTGGTATTACTTAT
GATGAATGGAATGCTATTCCTGAAGTCTAAGACTACACTATTAAAAAGAGTAAAAATGAA
AAATACACTCCTGTTCCAGACCATATTATTTAGAGCGCAAGATCGGAAGGTTCATTTAGC
ACTTCTTTAGATGTAACTGGTCTCCAAACTCCTCATAACATCAACGATATTGGTAAAGCC
AACTAGACTATTTTTACTTCAAGATTGGATAAATCTTCAGATCAAGTTAGTGGTATTTCT
ACAGTTGATAAGTCAGGTTACTTAACTAGTTTAAATTCATAACTTGTGAATTCTTCAGCA
GATATTGGTGATTTTAAACGTGCTCGTAATTTGATGAAGAGTTTTGTTAAAACTGATCCG
AAAAATCCAGTTGGTTGGATCAGTGTTGCTCGTGTTGAAGAGTTAGATGGTAAAATTTAG
GAAGCTCGTAATGTTCTTTATTAGGGCTTACCACACTGTGAGACATCTGATGAAATATGG
GTAGAAATAGCTCGTTTAGAAACTCCTGAAAAAGCTCGTGCTCTGCTTGCTAAAGCAGCT
ACTATACTTCCTAAGAGCTTAAAAATTTGGTTAGCAGCTGCAGATTTAGAAAGTAATCGT
GAGATGAAGGTTAAAATTTTAAAGAAAGCACTTGAACATATCCCTGATTAACCAAGACTT
TGGAAGAAGCTTATTGAATACGAAGAAAGCTAAAAGGAAGCAAAAATTCTTCTTTATAAG
GCTGTAGAATGTATTCCTGATGACTTAGATATGTGGTTAGCTCTTGCTAAACTGGAAACA
TACGAAAATGCAAAAGCTGTTTTAAATAAGGCACGTAAAATTCACCCTTAAGAATTGTCA
ATTTGGGTTAACGCTGCTAAATTAGAAGAATCTCAAGGATAACCTTAGGAAACTATCACA
AAGGTGTTATAAAATGCAATCAAATATTTTTCAAGCAAAAATATCAATATTGTAAAAGAA
GACTGGCTAAAAGAAGCAGCATACTGTGAAAAATCAGGAAATTTAAATACTTGTATAGCT
ATTGTTTAAGCTATCGTTCTTCATAACGTTCATGATAAATCTGATAAAGAACGTATCATT
AAGGAAGAAGCAAAGAATATGATTGAAGGAACTTGTATTGGAACAGGACGTGCCATTTAT
GAATTTGGTATTGAAGCACTCAAACCTGACAATATTGACCTTTTTCAAGCAACAATCGAC
TTTGAATAGAATACAGGAAAAGATAAAGATAATCTAAAACGCTTGTACAAGGAAGCTACA
ACTCAGCATCCTAAATATGAGAGTTTTTGGATTTAAAGAATCAAGTTCCATTGGTAAGAA
GCCAACAAAGTCATAGAGTAGGCATAATTATAAAATCACAGCGAAAAAAATATTGAAACT
CCATCTACAGTAGATGAAGAAGCTCAAATGAATTAATAAATTACTGCACAAAAGGCAGAA
ATATAAAAATTGCTCTAAGAATCATAAGAAAATTTACCTGAAAGCTAACAAATCCTTGTC
TTATCTATTAAATATCTTAAGAAGAATGAAGAGATAGATCAAGCAAGGGAATTAGTTTAC
AAAGCAAGAAAAAATAACCCAACACACTAAGTTTACCTTAGTCTACTTAAATTGGAATAT
TAAACAGGTGCTTTACAAAAGGCTTTCTAAGAATCTTAAAATGCAATGGGAGCATTCCCA
AATTGTGAAAAGATATTTATCTTATCTGCTAAAATAGCTTATGCTCATAAATCAATTGAA
TAAGCTCGTTAAGTCTATGAAAAAGGGCTACGTTTTAATCCCATGAGTGTTAGTTTGATT
CAAAAGTATGTAGAACTGGAAATAAATCATAAATACTTTGCTCGTGCTCGTCCTGTTCTT
GAAAAATTCCGTGTTAAGCTCCCCAAAAATCCCGAACTTTGGTGCACTGCAGTATAATTA
GAAATAGAAGCTGAAAATAAAAAAGGAGCTAGATATATGCTAGCCCGTGCTTTAAAGGAG
TGTCCTGATTATACTCAATTATGGTCTTATGCTATCGAATTAGAGCCTAAGGCTACTCGT
AAGAAAAAAACTTCTGAAGCCTTGGAAAAATGTAGATAAGATCCATATGTGAACGTTTCT
GTTGCCAAATTATTTTGGAAAGAACGTAAAATGGATAAAGCACGTAAATGGATTGAGAAA
TCAACCTTTGAAAGACCTGAAATAATGGATTCGTGGGCTGCTCTCTATCTTTTAGTATTA
GAAACTGAAGGCCGTTAATAAGCAGATGAAGTCTTAATTAAGGTTAAGCAATTAGATGTC
CATAGAGAAGGTCGTTTATACTAAAAGATAAAAAAATCAGATGACGGATGGAGATATAGC
TTCGATTAAATATTTATAAAAATAACAGATCAAATAAAAAAAGAACTAAGTAATATAGAG
TGA
