Identifiers and Description

Gene Model Identifier

TTHERM_00470530

Standard Name

NMD3 (nonsense-mediated mRNA decay protein 3)

Aliases

PreTt22467 | 56.m00171 | 3686.m00014

Description

NMD3 60S ribosomal export protein NMD3 putative; NMD3 family protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF04981 ) NMD3 family
• ( PF04702 ) Vicilin N terminal region

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 19.4%

TetraMine Data

TTHERM_00470530

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_11389.1	9.997093137033517e-262	NMD3 family protein (628 aa)
Oxytricha	Contig20934.0.g47	4.998599334973554e-137	NMD3 family
DictyBase	DDB_G0271306	4.000347951747671e-122	nmd3 on chromosome: 2 position 129822 to 131608
SGD	YHR170W	1.0000409741368237e-118	NMD3 Protein involved in nucle ar export of the large ribosom al subunit; acts as a Crm1p-de pendent adapter protein for ex port of nascent ribosomal subu nits through the nuclear pore complex
WormBase	WBGene00012030	4.0002634815779907e-110	status:Confirmed UniProt:Q22 792 protein_id:CAA96689.2
Stentor Coeruleus	SteCoe_14944	3.817497188671175e-54

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00470530(coding)
ATGTAGGGAGCCTCATAGTTATTAAACATTAGTGCAAGATCAAATGGATCTCAATTTATG
AGCAGCACTTTCTAAAGAGTCACCGCAAACATCCTCTGTTGTATGTGTGGTGTCTCCTTT
AATGCTGCCTAAACAAGAACAAATATGTGTGTTAATTGTTTAACCAATTAACAAGATATT
ACTACAGGAATTACTAAATAGGGAGTAGTTAATTTTTGTCGTATGTGCAGACGTTACAAC
AAACCACCTTGGGTTTATTGTGAACGTGAAAGCAAAGAAATGCTCTCTCTTTGTCTTAAG
AAGATTAAGGGTCTTGAGAAGGTTAAACTCATAGACAGTGCTTTCTTGTATACTGAACCC
CATTCTCGTCGTATTCGTATCCGTCTTACTATCTAAAAAGAAGTCATGAATAATACTTCT
ATCTAATAAAATTTTGTCGTTGAATTCGTAGAACACTACGGCTAGTGTGATGACTGTAAA
AAGGAATTTACTCCTCACACATGGGGTGCTTAAGTCTAACTTCGTTAAAAAGTTGAACAC
AAAAAGACTTTCTTCTTCTTAGAATAAGTTATGTTAAAGCATAATGCTCACGATAAAGTT
TTGAAAGTAGAAGAAAAGGATGATGGTTTAGATTTCTTCTATAAAAATAAAATGTAAGCA
AATCGTTTGGTAGACTTCATATAAAGTGTTATCCCCTGCAAGATTAAGCCTTCCAAACAG
CTTATCGGACTTGACGATCGTAACAATATTTACAATTACAAATATTCTTGGTCTGTTGAA
ATTCCTAAAATATGCAAGGATGACTTGTGTGTTTTCCCTCCTAGATTATGCAAAGAGTTA
GGAGGTATCAGTCCTCTTGTATTATGTGTTAAAGTTAGCAATATGCTCCATTTCGTAGAT
ACTCACACTCATAAGCGTATTGACATCACTGCTGAAAGATACTTCCATTATGAAAACGAC
ATTATTGTTCTCTCCTTAAAGAAAAACTCTACTGAATTTATGGTTACTGGTATTGAAAAA
ATTGAAAATGAATTTACTAATCCCTAAAGCTTGAATGAATCCTCTGTTAACACCAGTTAC
ATGTCTTCAATCAGCAACGTTTACTAAGATAAACTAGCTCACTTAACCCTCATGCGTACT
AGCGATTGGAAAGAATTCCATGCTAAAGCACATCTTGGTGAAATTATTAAGGAAGGATGC
ATGGTTTTGGGTTATGATTTGACAACATTGAACTACTCTGAAGACCTTGAAGTTCTTAAA
AATGCTCCTGAAATTATTATTGTCAAACGTATTTATGATAAGGAAAATAAAGCCCGTATT
TGGAAGCTTAAGCGTTTATAGATGGATGGTGTTATGGTTGAAGAAAATACCGAAGAAGCT
AATAAGAAGGGCAAGAAAAAAATAGTCTCAGACTAGGATAAAGAATAAGATTTTGAAGAG
TTTATGGATGACATAGAACGTGATCCTCTTATGCGTGAAAAAATTAATTTATATAAGGAT
GATGAAGGAATTAAAAAGCTCTCAGATAAGGAACTTGCAAGAAAGCAATAACTTTCCAGA
CGTCTTAAAAGAAAAATGCTTAAAGTTATTAACGTTAAAGTTAAAGATCCCTAAGAAATT
ATCAGATAACAAGAAGAAGAATTATAAGAGAAGCTTCGTATCGCAGAAGAAAAGAGGGCT
GAAAAGGAAGCTAAAAAGAAAGAAAAGGAAGACGAAGAAGACTACAACCGTAACGAAGTT
AAGTTGGCTGAATTATTAGAAGATCTTAATCTTGAAGAAGATAAAGGTGAAGAAGATGGA
GACAAAGTCTTTGATGAAGACAATTTCATTGACGAATTTATTAAAAGACTTGATCATATT
AAAATTGAAAAGTAATGA

>TTHERM_00470530(protein)
MQGASQLLNISARSNGSQFMSSTFQRVTANILCCMCGVSFNAAQTRTNMCVNCLTNQQDI
TTGITKQGVVNFCRMCRRYNKPPWVYCERESKEMLSLCLKKIKGLEKVKLIDSAFLYTEP
HSRRIRIRLTIQKEVMNNTSIQQNFVVEFVEHYGQCDDCKKEFTPHTWGAQVQLRQKVEH
KKTFFFLEQVMLKHNAHDKVLKVEEKDDGLDFFYKNKMQANRLVDFIQSVIPCKIKPSKQ
LIGLDDRNNIYNYKYSWSVEIPKICKDDLCVFPPRLCKELGGISPLVLCVKVSNMLHFVD
THTHKRIDITAERYFHYENDIIVLSLKKNSTEFMVTGIEKIENEFTNPQSLNESSVNTSY
MSSISNVYQDKLAHLTLMRTSDWKEFHAKAHLGEIIKEGCMVLGYDLTTLNYSEDLEVLK
NAPEIIIVKRIYDKENKARIWKLKRLQMDGVMVEENTEEANKKGKKKIVSDQDKEQDFEE
FMDDIERDPLMREKINLYKDDEGIKKLSDKELARKQQLSRRLKRKMLKVINVKVKDPQEI
IRQQEEELQEKLRIAEEKRAEKEAKKKEKEDEEDYNRNEVKLAELLEDLNLEEDKGEEDG
DKVFDEDNFIDEFIKRLDHIKIEKQ

>TTHERM_00470530(gene)
ATGTAGGGAGCCTCATAGTTATTAAACATTAGTGCAAGATCAAATGGATCTCAATTTATG
AGCAGCACTTTCTAAAGAGTCACCGCAAACATCCTCTGTTGTATGTGTGGTGTCTCCTTT
AATGCTGCCTAAACAAGAACAAATATGTGTGTTAATTGTTTAACCAATTAACAAGATATT
ACTACAGGAATTACTAAATAGGGAGTAGTTAATTTTTGTCGTATGTGCAGACGTTACAAC
AAACCACCTTGGGTTTATTGTGAACGTGAAAGCAAAGAAATGCTCTCTCTTTGTCTTAAG
AAGATTAAGGGTCTTGAGAAGGTTAAACTCATAGACAGTGCTTTCTTGTATACTGAACCC
CATTCTCGTCGTATTCGTATCCGTCTTACTATCTAAAAAGAAGTCATGAATAATACTTCT
ATCTAATAAAATTTTGTCGTTGAATTCGTAGAACACTACGGCTAGTGTGATGACTGTAAA
AAGGAATTTACTCCTCACACATGGGGTGCTTAAGTCTAACTTCGTTAAAAAGTTGAACAC
AAAAAGACTTTCTTCTTCTTAGAATAAGTTATGTTAAAGCATAATGCTCACGATAAAGTT
TTGAAAGTAGAAGAAAAGGATGATGGTTTAGATTTCTTCTATAAAAATAAAATGTAAGCA
AATCGTTTGGTAGACTTCATATAAAGTGTTATCCCCTGCAAGATTAAGCCTTCCAAACAG
CTTATCGGACTTGACGATCGTAACAATATTTACAATTACAAATATTCTTGGTCTGTTGAA
ATTCCTAAAATATGCAAGGATGACTTGTGTGTTTTCCCTCCTAGATTATGCAAAGAGTTA
GGAGGTATCAGTCCTCTTGTATTATGTGTTAAAGTTAGCAATATGCTCCATTTCGTAGAT
ACTCACACTCATAAGCGTATTGACATCACTGCTGAAAGATACTTCCATTATGAAAACGAC
ATTATTGTTCTCTCCTTAAAGAAAAACTCTACTGAATTTATGGTTACTGGTATTGAAAAA
ATTGAAAATGAATTTACTAATCCCTAAAGCTTGAATGAATCCTCTGTTAACACCAGTTAC
ATGTCTTCAATCAGCAACGTTTACTAAGATAAACTAGCTCACTTAACCCTCATGCGTACT
AGCGATTGGAAAGAATTCCATGCTAAAGCACATCTTGGTGAAATTATTAAGGAAGGATGC
ATGGTTTTGGGTTATGATTTGACAACATTGAACTACTCTGAAGACCTTGAAGTTCTTAAA
AATGCTCCTGAAATTATTATTGTCAAACGTATTTATGATAAGGAAAATAAAGCCCGTATT
TGGAAGCTTAAGCGTTTATAGATGGATGGTGTTATGGTTGAAGAAAATACCGAAGAAGCT
AATAAGAAGGGCAAGAAAAAAATAGTCTCAGACTAGGATAAAGAATAAGATTTTGAAGAG
TTTATGGATGACATAGAACGTGATCCTCTTATGCGTGAAAAAATTAATTTATATAAGGAT
GATGAAGGAATTAAAAAGCTCTCAGATAAGGAACTTGCAAGAAAGCAATAACTTTCCAGA
CGTCTTAAAAGAAAAATGCTTAAAGTTATTAACGTTAAAGTTAAAGATCCCTAAGAAATT
ATCAGATAACAAGAAGAAGAATTATAAGAGAAGCTTCGTATCGCAGAAGAAAAGAGGGCT
GAAAAGGAAGCTAAAAAGAAAGAAAAGGAAGACGAAGAAGACTACAACCGTAACGAAGTT
AAGTTGGCTGAATTATTAGAAGATCTTAATCTTGAAGAAGATAAAGGTGAAGAAGATGGA
GACAAAGTCTTTGATGAAGACAATTTCATTGACGAATTTATTAAAAGACTTGATCATATT
AAAATTGAAAAGTAATGA