Identifiers and Description

Gene Model Identifier

TTHERM_00471730

Standard Name

NCB2 (nuclear cap-binding protein subunit 2)

Aliases

PreTt22581 | 56.m00285 | 3686.m00128

Description

NCB2 nuclear cap-binding protein subunit 2; nuclear cap binding protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF00076 ) RNA recognition motif. (a.k.a. RRM,

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 9.9%

TetraMine Data

TTHERM_00471730

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_11273.1	3.999369102302453e-125	nuclear cap binding protein (2 34 aa)
DictyBase	DDB_G0287197	3.00039543526891e-44	ncbp2 on chromosome: 4 positio n 5395993 to 5396806
Oxytricha	Contig9742.0.g62	2.0005131442217614e-40	RNA recognition motif_ (a_k_a_ RRM, RBD, or RNP domain)
WormBase	WBGene00009141	1.9998323414791308e-36	locus:ncbp-2 Nuclear cap-bin ding protein subunit 2 statu s:Confirmed UniProt:Q93594 protein_id:CCD31067.1
SGD	YPL178W	1.000137892321693e-31	CBC2 Small subunit of the hete rodimeric cap binding complex that also contains Sto1p, comp onent of the spliceosomal comm itment complex; interacts with Npl3p, possibly to package mR NA for export from the nucleus ; contains an RNA-binding moti f
Stentor Coeruleus	SteCoe_18840	0.000000000000012664165549094176

General Information

No Data fetched for General Information

Associated Literature

1. Ref:26688337: Kataoka K, Mochizuki K (2015) Phosphorylation of an HP1-like Protein Regulates Heterochromatin Body Assembly for DNA Elimination. Developmental cell 35(6):775-88

Sequences

>TTHERM_00471730(coding)
ATGGCATCCTTTTTGTATGATAGTCTTTAACCTTAGAGTTTGTATTATGATAAAAAATCA
GAACTTAGCGAATAGGATTATAAAAAAAGACTTGAAACTACTACAACTGTATATGTAGGA
AATTTACATTTCCAAACAAGAGAGAGCGCACTTTATGAATTATTCTCTCGTGCAGGATAA
ATTAAAGATCTTATAATGGGTATTAATAAAGAAGGTTAATCAGCAGGATTCTGTTTTGTT
GTTTACCACACTCACGAAGAAGCTAGAATAGCAGTTGAATATATTTCATAGACAAAACTA
AATGATAGAGTGATTAGAGTAGATTGGGATTATGGTTTTAAAGAAGGAAGATAGTTTGGA
AGAGGTATGGATGGATATCAAAAAAGAGATTAATACAGATAATAAAATGACTCTGGACGT
CATAATATTCATTAGTAATGGAAGGAGCGTTAACAATAGCAATTTTAAGAAAGGTCTAAT
AGTAGAGGTGGCTTTAGAGGGGGCAACAACTATAATTAAGGATAAAGAGAAGGTTATAAG
GGAAGGTTTAATAATAATTAGGGCAATCATAACTTTGATGAAAATAGTTAAAATAGATAT
AAAAAGAGCTACAACTAATTTAGAAATGAACAAAAAGAAAGAAGTAATTCAAGTTCTCCA
GAATATCCTAAGAAAAAGAGATAATAGTAAGATGATGAAAATGATGATTGA

>TTHERM_00471730(protein)
MASFLYDSLQPQSLYYDKKSELSEQDYKKRLETTTTVYVGNLHFQTRESALYELFSRAGQ
IKDLIMGINKEGQSAGFCFVVYHTHEEARIAVEYISQTKLNDRVIRVDWDYGFKEGRQFG
RGMDGYQKRDQYRQQNDSGRHNIHQQWKERQQQQFQERSNSRGGFRGGNNYNQGQREGYK
GRFNNNQGNHNFDENSQNRYKKSYNQFRNEQKERSNSSSPEYPKKKRQQQDDENDD

>TTHERM_00471730(gene)
ATGGCATCCTTTTTGTATGATAGTCTTTAACCTTAGAGTTTGTATTATGATAAAAAATCA
GAACTTAGCGAATAGGATTATAAAAAAAGACTTGAAACTACTACAACTGTATATGTAGGA
AATTTACATTTCCAAACAAGAGAGAGCGCACTTTATGAATTATTCTCTCGTGCAGGATAA
ATTAAAGATCTTATAATGGGTATTAATAAAGAAGGTTAATCAGCAGGATTCTGTTTTGTT
GTGTAATTTAAGTTATTTTTTGAAAAATTTATAATTTTGTTTAAATAAATGTGTAAAAAT
ATATAATAGCTATAAATATATAAATTTCGTTATTTAAAAAAAGTTACCACACTCACGAAG
AAGCTAGAATAGCAGTTGAATATATTTCATAGACAAAGTTGGTTATTAAATTTTATCATT
TAAAAAAATCTAACTAGTTACTAAGAAAAATTTTAATTTATTAAAACTTAGACTAAATGA
TAGAGTGATTAGAGTAGATTGGGATTATGGTTTTAAAGAAGGAAGATAGTTTGGAAGAGG
TATGGATGGATATCAAAAAAGAGATTAATACAGATAATAAAATGACTCTGGACGTCATAA
TATTCATTAGTAATGGAAGGAGCGTTAACAATAGCAATTTTAAGAAAGGTCTAATAGTAG
AGGTGGCTTTAGAGGGGGCAACAACTATAATTAAGGATAAAGAGAAGGTTATAAGGGAAG
GTTTAATAATAATTAGGGCAATCATAACTTTGATGAAAATAGTTAAAATAGATATAAAAA
GAGCTACAACTAATTTAGAAATGAACAAGTATATTTATAAATATTTTAATTGTAAATTAA
TTAATATCATTTTATCATAATACAATAGAAAGAAAGAAGTAATTCAAGTTCTCCAGAATA
TCCTAAGAAAAAGAGATAATAGTAAGATGATGAAAATGATGATTGA