Identifiers and Description

Gene Model Identifier

TTHERM_00600670

Standard Name

LSD2

Aliases

PreTt22130 | 83.m00199 | 3685.m00091

Description

flavin containing family amine oxidase

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• electron transfer activity (IEA) | GO:0009055
• oxidoreductase activity (IEA) | GO:0016491

Domains

• ( TIGR02731 ) phytoene desaturase
• ( TIGR02734 ) phytoene desaturase
• ( TIGR02732 ) carotene 7,8-desaturase
• ( PF01266 ) FAD dependent oxidoreductase
• ( TIGR00031 ) UDP-galactopyranose mutase
• ( PF01593 ) amine oxidase, flavin-containing
• ( TIGR00137 ) tRNA:m(5)U-54 methyltransferase
• ( PF03778 ) Protein of unknown function (DUF321)

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 44.9%

TetraMine Data

TTHERM_00600670

WebApollo

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Tetrahymena Stock Center

• ( SD01740 ) Micronucleus: PAR1 gene partially replaced by neo4-KanR2 cassette. Macronucleus: LSD2 gene partially replaced by neo4-KanR2 cassette.

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Stentor Coeruleus	SteCoe_4768	0
Tetrahymena borealis	EI9_14924.1	9.997093137033517e-262	amine oxidase, flavin-containi ng family protein (455 aa)
DictyBase	DDB_G0289265	2.0008113830639685e-30	DDB_G0289265 on chromosome: 5 position 2564981 to 2566834
WormBase	WBGene00000137	1.000116773704384e-19	locus:amx-1 Amine oxidase fa mily member 1 status:Partial ly_confirmed UniProt:Q21988 protein_id:CAA84671.3
SGD	YMR020W	0.0000000039998859049333245	FMS1 Polyamine oxidase, conver ts spermine to spermidine, whi ch is required for the essenti al hypusination modification o f translation factor eIF-5A; a lso involved in pantothenic ac id biosynthesis
Oxytricha	Contig18181.0.g40	0.000000004999139696582238	Flavin containing amine oxidor eductase

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00600670(coding)
ATGAGTACCAAACGGAAATCTGTTTTAATTATTGGTGCTGGTATATCTGGTTTAGCTGCT
GCTCATTCTTTGCATGAGAATGGATTTGATGTTCAAATTTTTGAAGCTCGAAAGGAGTTT
GGAGGAAGAATACGTAAGGATGATTCATTTGCTGGGTTCACCCTCGAGGTAGGCGGCGAG
GAAATCCACAAAGTGAACAGTCCTTATTACCATCTAGCCCTGAAAATGGGAGCTGATCTT
AAACCTGATGACACACTCAATCATTACTTTGAAGACATTGAAAAAGAAGAACTCATTGAT
AGAGAAGAATTTTTAAACAAGTACAATGACTAATACTTCTACAATGAAGTTGTTTAAAAT
AGAGACATCTAAGACGACTCTCAGTCACTCTAAAATTTCTTTACCAAAAAGGGACTAAAA
TCTCAATTTTACCAGTGGTACGAAGCTTTCTGGGGTATTGAAAACGGAGGTTCTCTGAAT
GAAATTTCTGTAAAAGCATACGGAGATTACGAAAGTGGTAGAAAGAGTGATCATGACTTA
AATTTCATATTGATGAACACTTCTCACTATGAGATCATTGAAAAAGCTTTTGAATCTGTA
TTACCTTTCATTCATTACTCTACTCCTATCACTGAAATCAACTACTTTGGTGAAAAAGAA
CACCCATTATAAAGAGACGAAGATGATGAAGATGAAGATAATGACGAAGATGACTGTAAA
GGAAAGGATTTCAATAGAGTTATCATTTTCGATAAGTAGGGAAATAGATACGAAGGAGAC
TATATCATTGTCACAGTTCCTATTTCTTAGTTGTAAAATAAAACAATTCGCTTTAATCCA
GAATTACCACCTTAAAAGTAAGATGCTATTCGTCGTATGAAGCTCGGAAGAGGAGGTAAA
ATCCATTTCAAATTTAAGAATAGATTCTGGCCTGATAATGCAAGGACAATCTTTTTAAGA
TCTAAAATCAGTTTCTTGTGGAATCAATACCACGAATAGAAAGATACTGATGAAATTCAA
ACTAATGTCTTGGCTGGTCTTTTAGCTGGTGATATTATGGATGAAATGCAAGATCCTGAA
AAAAGGTAGGCTCTTATTGATGAAGTTTTAGAAAAAATGACTCGTGTCTTCAAATACCCA
AATGCAAAGGAAGAATTATTAGATGTTATGTGGAATGATTTTACTAATTTTGAATACATC
TAAGGTAACTACTCAATGCCAACTTTAAATATTGGTAGCTCTCGCTATATTTATTAATAG
CCAGTTGATAACATACTATTCTTTGCTGGAGAAGCTTCTCATACTACCGATTCGATGACA
ATTCATGGTGCTTATGAGACAGGTTTGCGTGACGCATAGCGCATCATCGATCTTCAGAAG
GAAAAGAAGTGA

>TTHERM_00600670(protein)
MSTKRKSVLIIGAGISGLAAAHSLHENGFDVQIFEARKEFGGRIRKDDSFAGFTLEVGGE
EIHKVNSPYYHLALKMGADLKPDDTLNHYFEDIEKEELIDREEFLNKYNDQYFYNEVVQN
RDIQDDSQSLQNFFTKKGLKSQFYQWYEAFWGIENGGSLNEISVKAYGDYESGRKSDHDL
NFILMNTSHYEIIEKAFESVLPFIHYSTPITEINYFGEKEHPLQRDEDDEDEDNDEDDCK
GKDFNRVIIFDKQGNRYEGDYIIVTVPISQLQNKTIRFNPELPPQKQDAIRRMKLGRGGK
IHFKFKNRFWPDNARTIFLRSKISFLWNQYHEQKDTDEIQTNVLAGLLAGDIMDEMQDPE
KRQALIDEVLEKMTRVFKYPNAKEELLDVMWNDFTNFEYIQGNYSMPTLNIGSSRYIYQQ
PVDNILFFAGEASHTTDSMTIHGAYETGLRDAQRIIDLQKEKK

>TTHERM_00600670(gene)
ATGAGTACCAAACGGAAATCTGTTTTAATTATTGGTGCTGGTATATCTGGTTTAGCTGCT
GCTCATTCTTTGCATGAGAATGGATTTGATGTTCAAATTTTTGAAGCTCGAAAGGAGTTT
GGAGGAAGAATACGTAAGGATGATTCATTTGCTGGGTTCACCCTCGAGGTAGGCGGCGAG
GAAATCCACAAAGTGAACAGTCCTTATTACCATCTAGCCCTGAAAATGGGAGCTGATCTT
AAACCTGATGACACACTCAATCATTACTTTGAAGACATTGAAAAAGAAGAACTCATTGAT
AGAGAAGAATTTTTAAACAAGTACAATGACTAATACTTCTACAATGAAGTTGTTTAAAAT
AGAGACATCTAAGACGACTCTCAGTCACTCTAAAATTTCTTTACCAAAAAGGGACTAAAA
TCTCAATTTTACCAGTGGTACGAAGCTTTCTGGGGTATTGAAAACGGAGGTTCTCTGAAT
GAAATTTCTGTAAAAGCATACGGAGATTACGAAAGTGGTAGAAAGAGTGATCATGACTTA
AATTTCATATTGATGAACACTTCTCACTATGAGATCATTGAAAAAGCTTTTGAATCTGTA
TTACCTTTCATTCATTACTCTACTCCTATCACTGAAATCAACTACTTTGGTGAAAAAGAA
CACCCATTATAAAGAGACGAAGATGATGAAGATGAAGATAATGACGAAGATGACTGTAAA
GGAAAGGATTTCAATAGAGTTATCATTTTCGATAAGTAGGGAAATAGATACGAAGGAGAC
TATATCATTGTCACAGTTCCTATTTCTTAGTTGTAAAATAAAACAATTCGCTTTAATCCA
GAATTACCACCTTAAAAGTAAGATGCTATTCGTCGTATGAAGCTCGGAAGAGGAGGTAAA
ATCCATTTCAAATTTAAGAATAGATTCTGGCCTGATAATGCAAGGACAATCTTTTTAAGA
TCTAAAATCAGTTTCTTGTGGAATCAATACCACGAATAGAAAGATACTGATGAAATTCAA
ACTAATGTCTTGGCTGGTCTTTTAGCTGGTGATATTATGGATGAAATGCAAGATCCTGAA
AAAAGGTAGGCTCTTATTGATGAAGTTTTAGAAAAAATGACTCGTGTCTTCAAATACCCA
AATGCAAAGGAAGAATTATTAGATGTTATGTGGAATGATTTTACTAATTTTGAATACATC
TAAGGTAACTACTCAATGCCAACTTTAAATATTGGTAGCTCTCGCTATATTTATTAATAG
CCAGTTGATAACATACTATTCTTTGCTGGAGAAGCTTCTCATACTACCGATTCGATGACA
ATTCATGGTGCTTATGAGACAGGTTTGCGTGACGCATAGCGCATCATCGATCTTCAGAAG
GAAAAGAAGTGA