Identifiers and Description
Gene Model Identifier
TTHERM_00387050Standard Name
LIG4 (DNA ligase IV)Aliases
PreTt24799 | 41.m00206Description
LIG4 ATP-dependent DNA ligase; DNA ligase required for nonhomologous end-joining (NHEJ)Genome Browser (Macronucleus)
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Genome Browser (Micronucleus)
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Gene Ontology Annotations
Molecular Function
- ATP binding (IEA) | GO:0005524
- DNA ligase (ATP) activity (IEA) | GO:0003910
- DNA binding (IEA) | GO:0003677
Biological Process
- DNA repair (IEA) | GO:0006281
- DNA replication (IEA) | GO:0006260
- DNA recombination (IEA) | GO:0006310
Domains
- ( TIGR02776 ) DNA ligase D
- ( PF04675 ) DNA ligase N terminus
- ( PF01779 ) ribosomal L29e protein family
- ( PF00533 ) BRCA1 C Terminus (BRCT) domain
- ( PF01068 ) ATP-dependent DNA ligase domain
- ( TIGR00574 ) DNA ligase I, ATP-dependent (dnl1)
- ( TIGR02779 ) DNA polymerase LigD, ligase domain
- ( PF01331 ) mRNA capping enzyme, catalytic domain
- ( PF04679 ) ATP dependent DNA ligase C
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 10.3%
TetraMine Data
TTHERM_00387050
WebApollo
Fullscreen View
Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_04427.1 9.997093137033517e-262 DNA ligase IV (1028 aa)
Oxytricha Contig17485.0.g101 6.001048086731027e-152 ATP dependent DNA ligase domai
n
DictyBase DDB_G0292760 9.995094197784295e-101 lig4 on chromosome: 6 position
2052081 to 2055347
Stentor Coeruleus SteCoe_12774 1.1677812485237086e-60 SGD YOR005C 9.998397555368434e-52 DNL4 DNA ligase required for n
onhomologous end-joining (NHEJ
), forms stable heterodimer wi
th required cofactor Lif1p, in
teracts with Nej1p; involved i
n meiosis, not essential for v
egetative growth
WormBase WBGene00002985 2.0003218023735366e-33 locus:lig-1 DNA ligase 1 s
tatus:Partially_confirmed Un
iProt:Q27474 protein_id:CAA9
8242.2
General Information
No Data fetched for General Information
Associated Literature
No Data fetched for Associated Literature
Sequences
>TTHERM_00387050(coding)
ATGCAAAACTATTATAAATGGCATAAGATAAAATAAGAATAAAATCAAGAATTGTCTGTT
AATATAAAGCCAATTTCTTCATCAAAGATGAAACAAAGTGATATTTCTACTAGGAAGAAA
AAAGCTTAAGAGTATAATATGGATTTTGATGAATTTTAGCAAGAGGATTCTAAAATTAAC
TAAAATTCTGATAATTTTCACTTTGGTGATTCAGCAGATGAATATGGTATTGATTCACCA
AAAATGAAAAGAGAAAAAGCAGTTAAAGAAGAAGATAATACCTTTCGCTTAGAAATTAAA
AAATCTCCTATCCTAGAGAAAACACTCTTTTCATTTTTAGTCAAATTTTATAATTAAGTC
TAGCAATCTAAAAAAGGGCAAAGAAAAAAATTTGTATAAAGATTCATTGACTCTACATTT
AAAACAAATAGATGTCCATCTTACACATTTACTATCCTTAGGTTAATAATGCCTCATCAT
GATAAATAACGTCTTAATTATGGCTTAAACTATAAAAATTTAGCTAAAGTTTTAAGCGAA
GTGTTTGCCTTATCAGAAGATAAACGTCAATAGCTTTTGAATTATAAAAGACCTTTAAAA
GACAACTAGCAAGTAGTTGGTGATTTTGGTGAAGTTGTATAAAATGTTTTGTAAGCATTT
ACTTAGAAAGCCACACTAACAATCAACGATGTGGATAGATGTCTTGATGAGCTTGCATAA
CCTCAAAATAGAGATCTAGCATCCAAAGAAAAAGTTTTAAGAAACTGCTTGAAGAATGCA
ACATCAGAAGAAATAAAATGGATTTCACGTTTGATCTTAAAGGACCTTAATCTTGGTATT
AATCACGAAATAATACTTGCACTTTTTCATCCTGATGCAGTAGTATTATTTAATTCTACT
TCTAGTCTTTGGGAGGTTTGCAAGGAATTTGTAGATCCAAATCATAAATTATCTAATGTC
CTTAGGCTATTTCATCCTATAAAACCTATGCTTGCAGGACGTAAGACTCTCAAAAGTATT
GAAGCTATTCTTAAAGGTAAAAACTATTTAGTTGAAACAAAATTTGATGGGGAGAGAATT
TAGTGTCATGTATCTCCTGAATCTTTAATGTTTTTCACTAGAAACTCAAACAATTATACA
AATATTTATGAAAGAATGATAGAGCATGTTAGAAGAAGTTTAAAAGATGCTGTTCATAGT
TGTATTTTAGATGGAGAAATGGTTGTAGTAAATAAAATAACAGGATAAAGAGTTTAATTT
GGTCTTAATAAAACTGTTGCAATGGAAAGAGAGGATGATGAATTATGTATATGTTATAAA
ATTTTTGACATTTTATATTTGAAGACTAAAGATAATAAAGAATATGCACTGACAGAATAC
ACATTGCAATATAGAAAAAAAATTTTAGAAAATTTAATTGACAATCAATAAGACAGAGTT
GAAGTTATTTTTGGTAGAGAATACTCAGATATAAATGACATACTGACTGAATTTAATGAG
GCAATACATAGAAACGATGAAGGTATAGTCATAAAGCAGCTCGATACTCTGTATTACCCA
GATGATAGATCTGATAAGTGGATTAAAATGAAAGGTGACTACTATGAAGGAATAATAGAT
ACCTTAGATTTGATAGTTATTGGAGGATATTTTGGTGAAAAGTCTTATAAAATTAATGGC
ATAGGAGATTGGACAGATCATATCACACATTATCTTGTTGCTGTAGCGAAAAAGATTGAT
CTACAAAACCCCTCTAACTCTATACTTGTGCCTTTTGCTAAAGTGGGAGCAGGTTTTACA
GCTAGAGACTATGCTGATATAAAAGCTAGAATGAGAGATCAATGGGTAAGAACTAATCAT
TCAAATAAAACGCCTTCTTTCATCATATAAAACTGGAAACCTGGAGAAAAAGATAAGCCA
GATGCATATATTTTATCTCCTCAAAACTCTCTTATTTTAGAGATTAGGGCAACTGAAATT
ATATAATCTTCTTAATATCCGACCAACTACACCTTAAGATTTCCGAGATTTGAAAAATTT
AGAAGAGATAAAGATTGGTTTGATTGCATGAAATTTAATGAAATTATAGAAATGACTTAA
AATTTAAAGAAAAAAGAATAAAAAGAGAGTGACAAAGAAGATAATGCAAGCGATGAAGAG
TAGGACGAAAATGGAGGAAAATTAAAGAAAAAAAGAAAAGGGTAAAATGGAGAAGAGATA
GAAGTAAATAGACAAGGTAGAAAGCCAAACTGGAAGACCAATAAAGTTATGGCTCAATAT
CTTGATATTGATGTTTCTGATGTCAAAGTAGAATCAAATATATTTAATAACTTTGTATTT
AATATAATTAATTTACCTCATGAAGTATCCTTGAGTGAGGAAAAGATATTGTTAGAGAAA
GCCTAGATTGAAAAAGGTATAGTTGCTAATGGTGGTAAAAAAGTATAAAATGATAGCAAT
CTTGTAACTCATTACATAGCTTCACATTATGATTTTAAAGTTTAAGTAATTGGTGATCAC
TATAAAGTAAATGTTCTATCCTTATAATGGGTAAAAGACTGTATCAAAAAAAAAACTTTA
TTAGATTACTCTCCCCGCTACATTATATATGGTTAAGATTAATTGCTTGAGAGAAATAAA
TTGCTTTATGATTAATATGGAGATTCTTATTACAAAGATGTTGATGAAGATGAGTTATTG
GATATTTTAAAATCTATGAAAATTGATTAAATAGAAGAAGAATTCTAGGAGAATGAAGAG
TTTGAAGAGGCTGTTAAAGATATTATTTCCATGAAAAACCAACTTTTCAAAGAATGTTTT
CCGTAAGGATAAACTTATTGCTTTTATAATGCAAATGATAAATTGAATTCAGATATAGAC
TTAAGATATTTAGTTGATCTAATTTAATTTAGTGGAAATTAAGTTGTATTTGACTTATAG
GACGAAATTGATTACATAGTGGCTTTAGATTATAGTGAAGCTGAAAACGAAAAAATTATT
ACCTTCAGAGAAAAAAACAGAAGTATGGAAGTTATAACTCCTAAAAACTTGTTGAATAAT
TTTGGAATAGCTCTAGAATGA>TTHERM_00387050(protein)
MQNYYKWHKIKQEQNQELSVNIKPISSSKMKQSDISTRKKKAQEYNMDFDEFQQEDSKIN
QNSDNFHFGDSADEYGIDSPKMKREKAVKEEDNTFRLEIKKSPILEKTLFSFLVKFYNQV
QQSKKGQRKKFVQRFIDSTFKTNRCPSYTFTILRLIMPHHDKQRLNYGLNYKNLAKVLSE
VFALSEDKRQQLLNYKRPLKDNQQVVGDFGEVVQNVLQAFTQKATLTINDVDRCLDELAQ
PQNRDLASKEKVLRNCLKNATSEEIKWISRLILKDLNLGINHEIILALFHPDAVVLFNST
SSLWEVCKEFVDPNHKLSNVLRLFHPIKPMLAGRKTLKSIEAILKGKNYLVETKFDGERI
QCHVSPESLMFFTRNSNNYTNIYERMIEHVRRSLKDAVHSCILDGEMVVVNKITGQRVQF
GLNKTVAMEREDDELCICYKIFDILYLKTKDNKEYALTEYTLQYRKKILENLIDNQQDRV
EVIFGREYSDINDILTEFNEAIHRNDEGIVIKQLDTLYYPDDRSDKWIKMKGDYYEGIID
TLDLIVIGGYFGEKSYKINGIGDWTDHITHYLVAVAKKIDLQNPSNSILVPFAKVGAGFT
ARDYADIKARMRDQWVRTNHSNKTPSFIIQNWKPGEKDKPDAYILSPQNSLILEIRATEI
IQSSQYPTNYTLRFPRFEKFRRDKDWFDCMKFNEIIEMTQNLKKKEQKESDKEDNASDEE
QDENGGKLKKKRKGQNGEEIEVNRQGRKPNWKTNKVMAQYLDIDVSDVKVESNIFNNFVF
NIINLPHEVSLSEEKILLEKAQIEKGIVANGGKKVQNDSNLVTHYIASHYDFKVQVIGDH
YKVNVLSLQWVKDCIKKKTLLDYSPRYIIYGQDQLLERNKLLYDQYGDSYYKDVDEDELL
DILKSMKIDQIEEEFQENEEFEEAVKDIISMKNQLFKECFPQGQTYCFYNANDKLNSDID
LRYLVDLIQFSGNQVVFDLQDEIDYIVALDYSEAENEKIITFREKNRSMEVITPKNLLNN
FGIALE>TTHERM_00387050(gene)
ATGCAAAACTATTATAAATGGCATAAGATAAAATAAGAATAAAATCAAGAATTGTCTGTT
AATATAAAGCCAATTTCTTCATCAAAGATGAAACAAAGTGATATTTCTACTAGGAAGAAA
AAAGCTTAAGAGTATAATATGGATTTTGATGAATTTTAGCAAGAGGATTCTAAAATTAAC
TAAAATTCTGATAATTTTCACTTTGGTGATTCAGCAGATGAATATGGTATTGATTCACCA
AAAATGAAAAGAGAAAAAGCAGTTAAAGAAGAAGATAATACCTTTCGCTTAGAAATTAAA
AAATCTCCTATCCTAGAGAAAACACTCTTTTCATTTTTAGTCAAATTTTATAATTAAGTC
TAGCAATCTAAAAAAGGGCAAAGAAAAAAATTTGTATAAAGATTCATTGACTCTACATTT
AAAACAAATAGATGTCCATCTTACACATTTACTATCCTTAGGTTAATAATGCCTCATCAT
GATAAATAACGTCTTAATTATGGCTTAAACTATAAAAATTTAGCTAAAGTTTTAAGCGAA
GTGTTTGCCTTATCAGAAGATAAACGTCAATAGCTTTTGAATTATAAAAGACCTTTAAAA
GACAACTAGCAAGTAGTTGGTGATTTTGGTGAAGTTGTATAAAATGTTTTGTAAGCATTT
ACTTAGAAAGCCACACTAACAATCAACGATGTGGATAGATGTCTTGATGAGCTTGCATAA
CCTCAAAATAGAGATCTAGCATCCAAAGAAAAAGTTTTAAGAAACTGCTTGAAGAATGCA
ACATCAGAAGAAATAAAATGGATTTCACGGTAATTTAATTTATTTTAATTAATATTAAAT
AAAAATCTATAAAAGTTTGATCTTAAAGGACCTTAATCTTGGTATTAATCACGAAATAAT
ACTTGCACTTTTTCATCCTGATGCAGTAGTATTATTTAATTCTACTTCTAGTCTTTGGGA
GGTTTGCAAGGAATTTGTAGATCCAAATCATAAATTATCTAATGTCCTTAGGCTATTTCA
TCCTATAAAACCTATGCTTGCAGGACGTAAGACTCTCAAAAGTATTGAAGCTATTCTTAA
AGGTAAGTAAAATATTAATTAATTTGAAACATTTAACATCCTTTTTACTTTTTTTTATAC
AGGTAAAAACTATTTAGTTGAAACAAAATTTGATGGGGAGAGAATTTAGTGTCATGTATC
TCCTGAATCTTTAATGTAAAAAAATTTTTTTTATATTTTTTTTGGTTTAACTTAATAATA
AAAATAGGTTTTTCACTAGAAACTCAAACAATTATACAAATATTTATGAAAGAATGATAG
AGCATGTTAGAAGAAGTTTAAAAGATGCTGTTCATAGTTGTATTTTAGATGGAGAAATGG
TTGTAGTAAATAAAATAACAGGATAAAGAGTTTAATTTGGTCTTAATAAAACTGTTGCAA
TGGAAAGAGAGGATGATGAATTATGTATATGTTATAAAATTTTTGACATTTTATATTTGA
AGACTAAAGATAATAAAGAATATGCACTGACAGAATACACATTGCAATATAGAAAAAAAA
TTTTAGAAAATTTAATTGACAATCAATAAGACAGAGTTGAAGTTATTTTTGGTAGAGAAT
ACTCAGATATAAATGACATACTGACTGAATTTAATGAGGCAATACATAGAAACGATGAAG
GTATAGTCATAAAGCAGCTCGATACTCTGTATTACCCAGATGATAGATCTGATAAGTGGA
TTAAAATGAAAGGTGACTACTATGAAGGAATAATAGATACCTTAGATTTGATAGTTATTG
GAGGATATTTTGGTGAAAAGTCTTATAAAATTAATGGCATAGGAGATTGGACAGATCATA
TCACACATTATCTTGTTGCTGTAGCGAAAAAGATTGATCTACAAAACCCCTCTAACTCTA
TACTTGTGCCTTTTGCTAAAGTGGGAGCAGGTTTTACAGCTAGAGACTATGCTGATATAA
AAGCTAGAATGAGAGATCAATGGGTAAGAACTAATCATTCAAATAAAACGCCTTCTTTCA
TCATATAAAACTGGAAACCTGGAGAAAAAGTAAGTTATTTAGAAAAATAATGACTTTTTA
AAAAAATAAAATTTAAGGATAAGCCAGATGCATATATTTTATCTCCTCAAAACTCTCTTA
TTTTAGAGATTAGGGCAACTGAAATTATATAATCTTCTTAATATCCGACCAACTACACCT
TAAGGTATTTATCTATTTTTAAAATACAATTTAAATGAAGTTTTGTAATATCCTAAATTA
AATTTTAGATTTCCGAGATTTGAAAAATTTAGAAGAGATAAAGATTGGTTTGATTGCATG
AAATTTAATGAAATTATAGAAATGACTTAAAATTTAAAGAAAAAAGAATAAAAAGAGAGT
GACAAAGAAGATAATGCAAGCGATGAAGAGTAGGACGAAAATGGAGGAAAATTAAAGAAA
AAAAGAAAAGGGTAAAATGGAGAAGAGATAGAAGTAAATAGACAAGGTAGAAAGCCAAAC
TGGAAGACCAATAAAGTTATGGCTCAATATCTTGATATTGATGTTTCTGATGTCAAAGTA
GAATCAAATATATTTAATAACTTTGTATTTAATATAATTAATTTACCTCATGAAGTATCC
TTGAGTGAGGAAAAGATATTGTTAGAGAAAGCCTAGATTGAAAAAGGTATAGTTGCTAAT
GGTGGTAAAAAAGTATAAAATGATAGCAATCTTGTAACTCATTACATAGCTTCACATTAT
GATTTTAAAGTTTAAGTAATTGGTGATCACTATAAAGTAAATGTTCTATCCTTATAATGG
GTAAAAGACTGTATCAAAAAAAAAACTTTATTAGATTACTCTCCCCGCTACATTATATAT
GGTTAAGATTAATTGCTTGAGAGAAATAAATTGCTTTATGATTAATATGGAGATTCTTAT
TACAAAGATGTTGATGAAGATGAGTTATTGGATATTTTAAAATCTATGAAAATTGATTAA
ATAGAAGAAGAATTCTAGGAGAATGAAGAGTTTGAAGAGGCTGTTAAAGATATTATTTCC
ATGAAAAACCAACTTTTCAAAGAATGTTTTCCGTAAGGATAAACTTATTGCTTTTATAAT
GCAAATGATAAATTGAATTCAGATATAGACTTAAGATATTTAGTTGATCTAATTTAATTT
AGTGGAAATTAAGTTGTATTTGACTTATAGGACGAAATTGATTACATAGTGGCTTTAGAT
TATAGTGAAGCTGAAAACGAAAAAATTATTACCTTCAGAGAAAAAAACAGAAGTATGGAA
GTTATAACTCCTAAAAACTTGTTGAATAATTTTGGAATAGCTCTAGAATGA