Identifiers and Description
Gene Model Identifier
TTHERM_00348170Standard Name
LIG1 (DNA ligase I )Aliases
PreTt05229 | 36.m00193 | 3703.m00026Description
LIG1 DNA ligase I ATP-dependent protein; homolog to human LIG1Genome Browser (Macronucleus)
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Genome Browser (Micronucleus)
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Gene Ontology Annotations
Molecular Function
- DNA ligase (ATP) activity (IEA) | GO:0003910
- DNA binding (IEA) | GO:0003677
- ATP binding (IEA) | GO:0005524
Biological Process
- DNA recombination (IEA) | GO:0006310
- DNA repair (IEA) | GO:0006281
- DNA replication (IEA) | GO:0006260
Domains
- ( TIGR02776 ) DNA ligase D
- ( PF04675 ) DNA ligase N terminus
- ( PF01068 ) ATP-dependent DNA ligase domain
- ( TIGR01725 ) phage protein, HK97 gp10 family
- ( TIGR00574 ) DNA ligase I, ATP-dependent (dnl1)
- ( TIGR02779 ) DNA polymerase LigD, ligase domain
- ( PF01331 ) mRNA capping enzyme, catalytic domain
- ( PF04679 ) ATP dependent DNA ligase C
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 10.2%
TetraMine Data
TTHERM_00348170
WebApollo
Fullscreen View
Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_09734.1 9.997093137033517e-262 DNA ligase I (816 aa)
Oxytricha Contig887.1.g61 9.997093137033517e-262 ATP dependent DNA ligase domai
n
DictyBase DDB_G0274493 1.9999565133760522e-166 lig1 on chromosome: 2 position
4400712 to 4404415
SGD YDL164C 1.0002534232488231e-144 CDC9 DNA ligase found in the n
ucleus and mitochondria, an es
sential enzyme that joins Okaz
aki fragments during DNA repli
cation; also acts in nucleotid
e excision repair, base excisi
on repair, and recombination
WormBase WBGene00002985 2.0002124324463154e-144 locus:lig-1 DNA ligase 1 s
tatus:Partially_confirmed Un
iProt:Q27474 protein_id:CAA9
8242.2
Stentor Coeruleus SteCoe_12774 0.00000000027894680928689246
General Information
No Data fetched for General Information
Associated Literature
No Data fetched for Associated Literature
Sequences
>TTHERM_00348170(coding)
ATGAAGCAAGGTACCATTAAAAACTTCTTTGGAAATAGCCAAAAGAAAAAGGAAGAATTA
GGTGAAAGCAATTTAGGTTCTGACAAAAAATGTGCTACTCAGTCTCAAAAAGGTGCTGAG
ACAAATGGTTAAAACTCAAAGGAATCCCAATAAAAGCCTGATGAATCAAAATCATAGCAA
GAAGAATCTTAATTAAAAGAAAAACCAAAAGCATAAAAAAGAAGATAAATAATAGATAGC
AGTGATGATGAAGAAGTTCCTTCATTGGCTACGATGTCTATAAGTAATAAGTAAATAAAA
AAAGTGGAAAATGAGAACTAAAAAAATGAGTCTTCTAAATCAGAAACAAAATCATCCACA
GATTCTAGCAATTTGTCGAAATAAATACTTGAAAAACCAAAAAATGAAGATGAAAAATTA
AGCCAATCATCTAAAAAAGCAGCAGAATAATAAGATACAAAAAAGAAACCAACTAATAAT
TTGAGAAAACTTTTGGATAAGCACTTTGACCCTATTGAAGACGCTCCATTCTATAAGGAT
TAAGAAGTCTTGTTTGGTTATTTATGTGATGGATTTGAAAGAGTAAATGAACAGGAAGGT
AAAAATTCAAAGGCTATACAAATTGAAATAATGTCAAAAATTTTCAAGTCGATCATATTA
CTTAATCCTGACTAGGTATATGAAGCTTATATGTTTTGTATTTTAAAGATAGCACCTGAT
TATGAGTCTAATGAGCTTGGTGTGGGTAGGGAAATACTTTAAAAAGCAATTAGTAATTGT
TGTGGTAAATCAGTTACTTAAATCAGAGATAGCCTTAATAAACTTGGTGACTTAGGTAAG
GTTGCGTCCGAAGCCAAATCTACCTAAAAAAACATCACAAATTATTTTTAAAAGCAGGCT
AAAGAAAAGCCTCCTATTACTCTTAATAGAACTTTTAATGATTTGAAAAGTATTGCAGCT
GCTTCAGGAAAGGACTCAACTGCAGAAAGAGAAAGAATTATTATAAAATATATGAATGAA
GCAAAACCAGATGAAGCATGCTATTTTATTAGATTTTTAGAGTAGAATTTGAAAATTGGT
GCTGCTGAAAAAACAATGTAGGCAGCTCTTTCCAAAGCATTCTTTGAAATTGCCCACAAT
ATCAAAAGCAATCACGTTTACACAGAATAATAAAACTAACTTTTAGAAGAATTTAACTTC
AATATCACTAGATGTCTGTGTGAGTTTCCAAACTATTACTAAGTCATTGAGACTTTGAAA
TAAATTGGCAAAGATATTTCTAAATTATTAGATATCTGCAAGATCACGATAGGCGTTCCC
TGCAAGCCTATGCTTGCCAAACCAACAAAATCAATTTAAGTTATTTTGGAAAGATTCAAA
GACATGACTTTTACTTGTGAATACAAGTATGATGGATTGAGAGGTCAAATACACTACGAT
GGAAAAGATGTTACTATTTTTAGCAGAAACCTAGAAAATATGACATAGATGTATCCTGAT
ATTGTAGAATTCATAAAAAAACATGTCAGCTAATCGAAAACTGTTAAAAATTTTATTTTA
GATAGTGAAATTGTAGCTTTTGATAAAAACACCAACAAAATTAGACCTTTCTAATAATTA
GCAACAAGAGGAAGAGTCAATGTCAAATTAGATGAAATTGATATAAAAGTTTGTGTTTTT
ATGTTCGATTTAATATATATCAATGACTAGAGTTTGCTACAAACAACACTTTAAGAAAGA
AGATAAAAAATTTAGGAGTGTTTTGTTCAAGAACCTGGTGAGTTCTGCTTTGCTGAGCAC
ATAAACACTGAAGATGTTGAACAAATTTAAGAATTCTTAGAAAAATCTGTTAAGGTGGGA
TGTGAAGGCTTGATGGTTAAAACTTTAGAAACTAACTCAACTTATGAACCAGCAAAAAGA
TCATTTAAATGGCTTAAACTCAAAAAAGATTATTTAGATAGTGGGTTAGGAGATACACTT
GATTTAGTTCCGATTGCAGCCTTCAAGGGTACAGGTAAAAGAGTTGGATTGTATGGTGCT
TACCTATTAGCTTGCTACAATGAAGATATGGAACGTTATGAAACAATATGTAAAATAGGT
ACAGGATTTTCAGATGAAATCTTAGAAGCATGCTATAAATTCTTCTAAGATAAAATTATA
CCATAGCCATAATCTGATTATTTAACCAAAGATTTTAAAGCAGATGTATGGTTTAAACCT
TCTGTAGTTTGGGAAATTAAGGGAGCAGATTTACAAATATCACCAGTATATACTTGTGCA
ATTAGTGAAACAAATTAAGAAAAAGGTATTGGTCTTAGATTCCCTCGTCTTATCAGAGTT
AGAGATGATAAAGATCCAGTCGATGCTACTTCTCCTTCTTTTATATACGATATATATAAA
CAATAAGCTGTTGTAGCAAATGATTTTGATGATGGTGATGATTTCTATTGA>TTHERM_00348170(protein)
MKQGTIKNFFGNSQKKKEELGESNLGSDKKCATQSQKGAETNGQNSKESQQKPDESKSQQ
EESQLKEKPKAQKRRQIIDSSDDEEVPSLATMSISNKQIKKVENENQKNESSKSETKSST
DSSNLSKQILEKPKNEDEKLSQSSKKAAEQQDTKKKPTNNLRKLLDKHFDPIEDAPFYKD
QEVLFGYLCDGFERVNEQEGKNSKAIQIEIMSKIFKSIILLNPDQVYEAYMFCILKIAPD
YESNELGVGREILQKAISNCCGKSVTQIRDSLNKLGDLGKVASEAKSTQKNITNYFQKQA
KEKPPITLNRTFNDLKSIAAASGKDSTAERERIIIKYMNEAKPDEACYFIRFLEQNLKIG
AAEKTMQAALSKAFFEIAHNIKSNHVYTEQQNQLLEEFNFNITRCLCEFPNYYQVIETLK
QIGKDISKLLDICKITIGVPCKPMLAKPTKSIQVILERFKDMTFTCEYKYDGLRGQIHYD
GKDVTIFSRNLENMTQMYPDIVEFIKKHVSQSKTVKNFILDSEIVAFDKNTNKIRPFQQL
ATRGRVNVKLDEIDIKVCVFMFDLIYINDQSLLQTTLQERRQKIQECFVQEPGEFCFAEH
INTEDVEQIQEFLEKSVKVGCEGLMVKTLETNSTYEPAKRSFKWLKLKKDYLDSGLGDTL
DLVPIAAFKGTGKRVGLYGAYLLACYNEDMERYETICKIGTGFSDEILEACYKFFQDKII
PQPQSDYLTKDFKADVWFKPSVVWEIKGADLQISPVYTCAISETNQEKGIGLRFPRLIRV
RDDKDPVDATSPSFIYDIYKQQAVVANDFDDGDDFY>TTHERM_00348170(gene)
ATGAAGCAAGGTACCATTAAAAACTTCTTTGGAAATAGCCAAAAGAAAAAGGAAGAATTA
GGTGAAAGCAATTTAGGTTCTGACAAAAAATGTGCTACTCAGTCTCAAAAAGGTGCTGAG
ACAAATGGTTAAAACTCAAAGGAATCCCAATAAAAGCCTGATGAATCAAAATCATAGCAA
GAAGAATCTTAATTAAAAGAAAAACCAAAAGCATAAAAAAGAAGATAAATAATAGATAGC
AGTGATGATGAAGAAGTTCCTTCATTGGCTACGATGTCTATAAGTAATAAGTAAATAAAA
AAAGTGGAAAATGAGAACTAAAAAAATGAGTCTTCTAAATCAGAAACAAAATCATCCACA
GATTCTAGCAATTTGTCGAAATAAATACTTGAAAAACCAAAAAATGAAGATGAAAAATTA
AGCCAATCATCTAAAAAAGCAGCAGAATAATAAGGTATGTGAAATTTAATCAATTTTTAA
ATATGATTTTTTTTATTTATTCTGTAGATACAAAAAAGAAACCAACTAATAATTTGAGAA
AACTTTTGGATAAGCACTTTGACCCTATTGAAGACGCTCCATTCTATAAGGATTAAGAAG
TCTTGTTTGGTTATTTATGTGATGGATTTGAAAGAGTAAATGAACAGGAAGGTAAAAATT
CAAAGGCTATACAAATTGAAATAATGTCAAAAATTTTCAAGTCGATCATATTACTTAATC
CTGACTAGGTATATGAAGCTTATATGTTTTGTATTTTAAAGATAGCACCTGATTATGAGT
CTAATGAGCTTGGTGTGGGTAGGGAAATACTTTAAAAAGCAATTAGTAATTGTTGTGGTA
AATCAGTTACTTAAATCAGAGATAGCCTTAATAAACTTGGTGACTTAGGTAAGGTTGCGT
CCGAAGCCAAATCTACCTAAAAAAACATCACAAATTATTTTTAAAAGCAGGCTAAAGAAA
AGCCTCCTATTACTCTTAATAGAACTTTTAATGATTTGAAAAGTATTGCAGCTGCTTCAG
GAAAGGTAAACAAACATAATTTATTTATTTATTGAACAACTCATAATTAAATGATTTATA
GGACTCAACTGCAGAAAGAGAAAGAATTATTATAAAATATATGAATGAAGCAAAACCAGA
TGAAGCATGCTATTTTATTAGATTTTTAGAGTAGAATTTGAAAATTGGTGCTGCTGAAAA
AACAATGTAGGCAGCTCTTTCCAAAGCATTCTTTGAAATTGCCCACAATATCAAAAGCAA
TCACGTTTACACAGAATAATAAAACTAACTTTTAGAAGAATTTAACTTCAATATCACTAG
ATGTCTGTGTGAGTTTCCAAACTATTACTAAGTCATTGAGACTTTGAAATAAATTGGCAA
AGATATTTCTAAATTATTAGATATCTGCAAGATCACGATAGGCGTTCCCTGCAAGCCTAT
GCTTGCCAAACCAACAAAATCAATTTAAGTAACAATAAATAAATATATAAATTATAAAGT
ATAATAAATTTACAAATACTTAAAGGTTATTTTGGAAAGATTCAAAGACATGACTTTTAC
TTGTGAATACAAGTATGATGGATTGAGAGGTCAAATACACTACGATGGAAAAGATGTTAC
TATTTTTAGCAGAAACCTAGAAAATATGACATAGATGTATCCTGATATTGTAGAATTCAT
AAAAAAACATGTCAGCTAATCGAAAACTGTTAAAAATTTTATTTTAGATAGTGAAATTGT
AGCTTTTGATAAAAACACCAACAAAATTAGACCTTTCTAATAATTAGCAACAAGAGGAAG
AGTCAATGTCAAATTAGATGAAATTGATATAAAAGTTTGTGTTTTTATGTTCGATTTAAT
ATATATCAATGACTAGAGTTTGCTACAAACAACACTTTAAGAAAGAAGATAAAAAATTTA
GGAGTGTTTTGTTCAAGAACCTGGTGAGTTCTGCTTTGCTGAGCACATAAACACTGAAGA
TGTTGAACAAATTTAAGTAAATTGATAACCAATTAATTATTGAAAAATTAACATCTATTT
TTTTTTTAGGAATTCTTAGAAAAATCTGTTAAGGTGGGATGTGAAGGCTTGATGGTTAAA
ACTTTAGAAACTAACTCAACTTATGAACCAGCAAAAAGATCATTTAAATGGCTTAAACTC
AAAAAAGATTATTTAGATAGTGGGTTAGGAGATACACTTGATTTAGTTCCGATTGCAGCC
TTCAAGGGTACAGGTAAAAGAGTTGGATTGTATGGTGCTTACCTATTAGCTTGCTACAAT
GAAGATATGGAACGTTATGAAACAATATGTAAAATAGGTACAGGATTTTCAGATGAAATC
TTAGAAGCATGCTATAAATTCTTCTAAGATAAAATTATACCATAGCCATAATCTGATTAT
TTAACCAAAGATTTTAAAGCAGATGTATGGTTTAAACCTTCTGTAGTTTGGGAAATTAAG
GGAGCAGATTTACAAATATCACCAGTATATACTTGTGCAATTAGTGAAACAAATTAAGAA
AAAGGTATTGGTCTTAGATTCCCTCGTCTTATCAGAGTTAGAGATGATAAAGATCCAGTC
GATGCTACTTCTCCTTCTTTTATATACGATATATATAAACAATAAGCTGTTGTAGCAAAT
GATTTTGATGATGGTGATGATTTCTATTGA