Identifiers and Description

Gene Model Identifier

TTHERM_00569290

Standard Name

LIA2 (localized in macronuclear anlagen 2)

Aliases

PreTt10459 | 76.m00161 | 3810.m02020 | DRH3

Description

DEAD/DEAH box helicase family protein

Genome Browser

Gene Ontology Annotations

Molecular Function

• nucleic acid binding (IEA) | GO:0003676
• ATP-dependent helicase activity (IEA) | GO:0008026
• ATP binding (IEA) | GO:0005524
• helicase activity (IEA) | GO:0004386

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database: TTHERM_00569290

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
ToxoDB	46.m00027	1.00001985756599e-106	Toxoplasma gondii DEAD/DEAH bo x helicase, putative
DictyBase	DDB0219818	1.00043485889854e-105	ddx17 DEAD/DEAH box helicase p utative RNA helicase
DictyBase	DDB0233431	1.00043485889854e-105	ddx17 DEAD/DEAH box helicase p utative RNA helicase
TAIR	AT1G55150	1.00026461339066e-103	DEAD box RNA helicase, putativ e (RH20)
ParameciumDB	GSPATP00010683001	9.99679536751975e-103	Paramecium tetraurelia GSPATP0 0010683001 protein
SGD	YNL112W	9.99924209282795e-100	DBP2 SGDID:S000005056, Chr XIV from 413641-414913,415916-416 283, Verified ORF, "Essential ATP-dependent RNA helicase of the DEAD-box protein family, i nvolved in nonsense-mediated m RNA decay and rRNA processing"
IPI(HUMAN)	IPI:IPI00023785.5	4.00017901319196e-98	1|TREMBL:Q59F66|ENSEMBL:ENSP0 0000216019|REFSEQ:NP_006377 |H - INV:HIT000008259;HIT00001500 4;HIT000026686;HIT000029762| V EGA:OTTHUMP00000028920 Tax_Id= 9606 Splice Isoform 1 of Proba ble ATP-dependent RNA helicase DDX17
FlyBase	FBgn0035720	9.99828570147986e-93
WormBase	F58E10.3	1.00024349209755e-91	WBGene00010260 ATP-dependent h elicase (DEAD box)
PlasmoDB	PFL1310c	5.99971392284393e-73	Plasmodium falciparum PFL1310c
CryptoDB	EAK87812	3.00148023798786e-60	Cryptosporidium parvum (Iowa) protein EAK87812

General Information

No Data fetched for General Information

Associated Literature

1. Ref:17519286: Yao MC, Yao CH, Halasz LM, Fuller P, Rexer CH, Wang SH, Jain R, Coyne RS, Chalker DL (2007) Identification of novel chromatin-associated proteins involved in programmed genome rearrangements in Tetrahymena. Journal of cell science 120(Pt 12):1978-89

Sequences

>TTHERM_00569290(coding)
ATGTGGGGAAATAGCTACAATAATAATAGTTCTAGTAATGGATACTCAAATAACAAAAGC
AACGGATATTCAAGCAGCAATAATAATGGAAACTCCTATGGAACCGGTGGCAAGTGGAAT
GATAACGGAGTTGGTTAAAATTTGGCTGCAATCGATTGGACAAAAGAAAATCTTACTACA
TTTTAGAAAGTTTTTTATAAGGAAAGTTAGAAAATAAGAACTGAAGAAGAAATCGAAGAA
TTTTACCGCCAGAACCACATCTCAGCCAAATCACCTCATGGAAAAGTACCTGACCCTTTT
TTAAGCTGGACAGATACTCACTTCCCTTAATATATTATGAATGAAGTTACTCACGCTAAA
TTTGAAAAACCCTCTCCTATTTAGTCTTTAGCATTCCCTGTAGTCCTTAGTGGTCACGAT
TTGATTGGTATTGCAGAAACAGGTAGTGGAAAAACTCTTTCCTTCCTTTTACCCTCAATA
GTTCATATTAATGCTCAACCAACTGTCAAAAAGGGAGATGGTCCTATCGTCCTCGTTCTT
GCTCCTACTAGAGAACTTGCTATGCAAATCGAAAGAGAGTCCGAAAGATTTGGTAAATCC
TCTAAGCTTAAATGTGCTTGTATCTATGGTGGTGCTGACAAATACTCCTAAAGAGCACTT
CTCCAATAAGGTGTAGATGTAGTTATTGCTACTCCTGGTAGACTTATTGACTTTTTAGAA
AGTGAAACTACTACTTTACGTAGAGTTACTTATCTCGTATTAGATGAAGCAGATAGAATG
TTAGATATGGGTTTTGAAATTTAAATTAGAAAAATCTTGGGTTAAATTAGACCTGATCGT
TAAACATTGATGTTTTCTGCTACCTGGCCTAAGAATGTTTAGAATCTTGCTTAAGATTAT
TGCAAGAATACTCCCGTTTATGTTCAAATCGGAAAACATGAATTAGCTATTAACGAAAGA
ATTAAATAAATTGTTTATGTTACAGATCAATCAAAGAAAATCAATCAACTTATCAAGCAA
TTAGATTGTTTGACTTAGAAAGATAAAGTATTGATTTTCGCTTAAACAAAGAAGGGATGT
GAAAGCATGAGTCGTATTTTGAATAAAGAAGGATTTAAGTGTCTTGCTATCCATGGTGAC
AAAGCCTAAAAAGACAGAGACTATGTTATGAACAAGTTCAAAAGCGGAGAATGCAGAATC
CTTATTGCTACAGACGTAGCCAGTAGAGGTTTGGATGTTAAGGATGTCTCCCACGTATTT
AATTACGATTTCCCAAAGGTTATGGAAGACTATGTCCATAGAATCGGTAGAACAGGTAGA
GCTGGAGCATATGGTTGTGCAGTATCTTTCCTTACTTTTGAAGATGATAAAAAGATATCA
AGGGAATATGTCCAAATGCTTCATGACGCTAAGTAAGAAATTCCCATTGATCTTCTTGAT
CTTGCTAGTATTAATCCCAGATACAGAACTTAATATAAAACTGTTTCCTCTTCATACTAT
GATATTAAGAAATTTAACAGTGCTGATACTTCAAAGCCTTCAGAAAATCAGAATGTTTCA
AATACTGCAAATAGCAGCGACAAGTACACCAGCAGTAGCAGCTACAATTAATATAAAAGC
AAAAAAGATGAAGATGACAAGAGAAGTAGAAGTAGAAGTCCATATAAATCTGAAAATAAC
AACAGATGGGATAAATATAATCGCACAAAAAGCCCAGAATACCGCAGTTCTAATGGATCT
TCTCATTATAACAACGTTAACAAGTATTCTTCAAATTCTAATAATAATTCAAGTTCATAT
TCAAAGAATTAATCCTCCACATCATCATCTTCTTCCTATGGATAGAATAATTAATCATCC
AATTTAATGAGTAAACCATCTAGTAAATTCTCTGCTCCTACAAATGGTAGTTACACAAAT
GGATTTTCTTCAGTCTAATAAAATTCTCAAGTTTAAAATCCATTTATGCCAATCAATCCT
TTACCTCAACCTTTTATGTACTAAATTCCTGGATTTAATGGTTTCCCTAATCAAGGTTTC
AATAACTTTTACACTGGTATGGTTCCTCCTCCTCCACTCCCTACTGGTGCTCCCTCATAA
TAATAAAATGGATTTGCTTAAAATACAACAACATCTTCTTGA

>TTHERM_00569290(protein)
MWGNSYNNNSSSNGYSNNKSNGYSSSNNNGNSYGTGGKWNDNGVGQNLAAIDWTKENLTT
FQKVFYKESQKIRTEEEIEEFYRQNHISAKSPHGKVPDPFLSWTDTHFPQYIMNEVTHAK
FEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSIVHINAQPTVKKGDGPIVLVL
APTRELAMQIERESERFGKSSKLKCACIYGGADKYSQRALLQQGVDVVIATPGRLIDFLE
SETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDRQTLMFSATWPKNVQNLAQDY
CKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQLDCLTQKDKVLIFAQTKKGC
ESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRILIATDVASRGLDVKDVSHVF
NYDFPKVMEDYVHRIGRTGRAGAYGCAVSFLTFEDDKKISREYVQMLHDAKQEIPIDLLD
LASINPRYRTQYKTVSSSYYDIKKFNSADTSKPSENQNVSNTANSSDKYTSSSSYNQYKS
KKDEDDKRSRSRSPYKSENNNRWDKYNRTKSPEYRSSNGSSHYNNVNKYSSNSNNNSSSY
SKNQSSTSSSSSYGQNNQSSNLMSKPSSKFSAPTNGSYTNGFSSVQQNSQVQNPFMPINP
LPQPFMYQIPGFNGFPNQGFNNFYTGMVPPPPLPTGAPSQQQNGFAQNTTTSS

>TTHERM_00569290(gene)
ATGTGGGGAAATAGCTACAATAATAATAGTTCTAGTAATGGATACTCAAATAACAAAAGC
AACGGATATTCAAGCAGCAATAATAATGGAAACTCCTATGGAACCGGTGGCAAGTAATAT
TTCTATTTCACTTTTCTTAAATTTTCTTATCTCTCTTAGCTCCTTTTAGGCTAAGAGCTT
AGCAAGATATTTAAATCAAAGTCTGGGACAATGATTTGAAACATTTCTATTTAAAAATTA
GGTGGAATGATAACGGAGTTGGTTAAAATTTGGCTGCAATCGATTGGACAAAAGAAAATC
TTACTACATTTTAGAAAGTTTTTTATAAGGAAAGTTAGAAAATAAGAACTGAAGAAGAAA
TCGAAGAATTTTACCGCCAGAACCACATCTCAGCCAAATCACCTCATGGAAAAGTACCTG
ACCCTTTTTTAAGCTGGACAGATACTCACTTCCCTTAATATATTATGAATGAAGTTACTC
ACGCTAAATTTGAAAAACCCTCTCCTATTTAGTCTTTAGGTATTGTTTGATTGAATTTAA
ACCAACAAACCAACCTACGATGGAACATTTTGAAACATAAATAAATAAATAAAAACCTAC
ACACATAGTTTGTTTAAAATATATTTGCAAAAAATAAACATTTAAACAAGCCAATTTCTA
CACTTAGCATACAAAATTCAAATCACAAACGAGTGTGTGTAATTTAATTAACAATATATA
TCAATGCGGGAATCAATCAATCAATGTTAAGAAGAAGCCAAAGGTTATTCCTTAAGAATA
AGCATCGCTCAATGTTTCCAAAGAGACCAATGTATTTATTCAATATGAATCTACTTGAAT
AAAGGTGAATTTATTCTTTCTGAGGGAATTATTGATCGAAGTGCTTATCATCCTCATTCT
TAATATTGTTTGTACAGCAGATTATTATCAGGAGGAGAACGAAATGGATCCAAAAAAGAT
AATCAGAGCTGAATGTAACTGTACTGTCATTTATCTTTTTGATTCATTTCAATTCTCTTG
AAAAACTGCATTTTCCCTTCAGAATTTTGATTTTCAAATCAATCATCCATTCTATTTCAC
ATTTCCATCTTAAAAAAGAAACAATCATCCCCGTCATTTATTTATTCCTTACAGCCAACA
AATTTCATTTATAAACTTATATTTATTTTAATAATCCTTCAGTATAACCATATAATTTGG
CTTTTTTGCTAAATTTTAAACACAAATCAATCAATCAATCAAAAATAAATTTAAATAGGA
TAGACAGATGTATCAATTTGCATATATTTAAAATAAATAGCCTTTGCAAATTTTCAAATT
TGCTTTATTATATAATTAATTTGTCTAATAACTTTAATCTAATTTTTTTTTTTTTCATTA
TTGATTGATAGAGGATTGACAAACAAAATTATCTTTTTTTTAAACAAATAATGAAATTTA
CAAGAGTTTGAAAAATCAAATTCTAAAGGGAAAATTATTTTTATCGCTCAATATTGTTTC
TTTTCATTATAGATTATTTTATCAAAAGCTCTATTTATTGGAAAAATTTACTTACCAATT
TATAGCTGATTAATAATTACTACTCACAAATGATTAAATATTTATAAGTTTGATTTTCCC
TAAAATTAACTAGCATTCCCTGTAGTCCTTAGTGGTCACGATTTGATTGGTATTGCAGAA
ACAGGTAGTGGAAAAACTCTTTCCTTCCTTTTACCCTCAATAGTTCATATTAATGCTCAA
CCAACTGTCAAAAAGGGAGATGGTCCTATCGTCCTCGTTCTTGCTCCTACTAGAGAACTT
GCTATGCAAATCGAAAGAGAGTCCGAAAGATTTGGTAAATCCTCTAAGCTTAAATGTGCT
TGTATCTATGGTGGTGCTGACAAATACTCCTAAAGAGCACTTCTCCAATAAGGTGTAGAT
GTAGTTATTGCTACTCCTGGTAAATATATATCAACATTTGAACACTTTTAACCAACTTTC
AAATAAATTTCTTAAATTAAACTTTTTTTTAATTTAAATTACAGGTAGACTTATTGACTT
TTTAGAAAGTGAAACTACTACTTTACGTAGAGTTACTTATCTCGTATTAGATGAAGCAGA
TAGAATGTTAGATATGGGTTTTGAAATTTAAATTAGAAAAATCTTGGGTTAAATTAGACC
TGATCGTTAAACATTGATGTTTTCTGCTACCTGGCCTAAGAATGTTTAGAATCTTGCTTA
AGATTATTGCAAGAATACTCCCGTTTATGTTCAAATCGGAAAACATGAATTAGCTATTAA
CGAAAGAATTAAATAAATTGTTTATGTTACAGATCAATCAAAGAAAATCAATCAGTATTT
AAATATTTTAACAATTATTTTTTCAATTATCTAAATATTCTTTTTTAATTAATAGACTTA
TCAAGCAATTAGATTGTTTGACTTAGAAAGATAAAGTATTGATTTTCGCTTAAACAAAGA
AGGGATGTGAAAGCATGAGTCGTATTTTGAATAAAGAAGGATTTAAGTGTCTTGCTATCC
ATGGTGACAAAGCCTAAAAAGACAGAGACTATGTTATGAACAAGTTCAAAAGCGGAGAAT
GCAGAATCCTTATTGCTACAGACGTAGCCAGTAGAGGTTTGGATGTTAAGGATGTCTCCC
ACGTATTTAATTACGATTTCCCAAAGGTTATGGAAGACTATGTCCATAGAATCGGTAGAA
CAGGTAGAGCTGGAGCATATGGTTGTGCAGTATCTTTCCTTACTTTTGAAGATGATAAAA
AGATATCAAGGGAATATGTCCAAATGCTTCATGACGCTAAGTAAGAAATTCCCATTGATC
TTCTTGATCTTGCTAGTATTAGTAATTATTTATTAATATGAATTCAATTCTAAATTTTTT
ACTTAAATAAAATAGATCCCAGATACAGAACTTAATATAAAACTGTTTCCTCTTCATACT
ATGATATTAAGAAATTTAACAGTGCTGATACTTCAAAGCCTTCAGAAAATCAGAATGTTT
CAAATACTGCAAATAGCAGCGACAAGTACACCAGCAGTAGCAGCTACAATTAATATAAAA
GCAAAAAAGATGAAGATGACAAGAGAAGTAGAAGTAGAAGTCCATATAAATCTGAAAATA
ACAACAGATGGGATAAATATAATCGCACAAAAAGCCCAGAATACCGCAGTTCTAATGGAT
CTTCTCATTATAACAACGTTAACAAGTATTCTTCAAATTCTAATAATAATTCAAGTTCAT
ATTCAAAGAATTAATCCTCCACATCATCATCTTCTTCCTATGGATAGAATAATTAATCAT
CCAATTTAATGAGTAAACCATCTAGTAAATTCTCTGCTCCTACAAATGGTAGTTACACAA
ATGGATTTTCTTCAGTCTAATAAAATTCTCAAGTTTAAAATCCATTTATGCCAATCAATC
CTTTACCTCAACCTTTTATGTACTAAATTCCTGGATTTAATGGTTTCCCTAATCAAGGTT
TCAATAACTTTTACACTGGTATGGTTCCTCCTCCTCCACTCCCTACTGGTGCTCCCTCAT
AATAATAAAATGGATTTGCTTAAAATACAACAACATCTTCTTGA