Identifiers and Description

Gene Model Identifier

TTHERM_00623050

Standard Name

LC3B

Aliases

PreTt07392 | 87.m00172 | 3814.m00877

Description

LC3B thioredoxin; Light chain subunit of ciliary three-headed outer arm dynein (OAD)

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Cellular Component

• outer dynein arm (ISS) | GO:0036157 | Ref:16933976
• microtubule associated complex (ISS) | GO:0005875 | Ref:16933976
• axonemal dynein complex (ISS) | GO:0005858 | Ref:16933976

Molecular Function

• microtubule motor activity (ISS) | GO:0003777 | Ref:16933976

Biological Process

• cilium movement (ISS) | GO:0003341 | Ref:16933976
• microtubule-based movement (ISS) | GO:0007018 | Ref:16933976
• microtubule-based process (ISS) | GO:0007017 | Ref:16933976

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 12.3%

TetraMine Data

TTHERM_00623050

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_11983.1	7.002411919958887e-50	thioredoxin family protein (10 8 aa)
WormBase	WBGene00010160	0.000000000000020000882446601127	locus:png-1 Peptide-N(4)-(N- acetyl-beta-glucosaminyl)aspar agine amidase status:Confirm ed UniProt:Q9TW67 protein_ id:CAB04487.2
SGD	YLR043C	0.00000000000020009182674645818	TRX1 Cytoplasmic thioredoxin i soenzyme of the thioredoxin sy stem which protects cells agai nst oxidative and reductive st ress, forms LMA1 complex with Pbi2p, acts as a cofactor for Tsa1p, required for ER-Golgi t ransport and vacuole inheritan ce
DictyBase	DDB_G0276057	0.0000000000019997478866288316	DDB_G0276057 on chromosome: 2 position 6469384 to 6471238
Oxytricha	Contig15740.0.g80	0.00000000009998509410508463	Thioredoxin

General Information

No Data fetched for General Information

Associated Literature

1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,

Sequences

>TTHERM_00623050(coding)
ATGTCTCATCCCTACATAGAAATTACAAGCACCAAGCAATTCGAAGATATTCTCGAAAAG
AACGAATATGTTTTAGTTGATTTCTTTGCTTCCTGGTGTGGCCCTTGCAAAATTTTAGCT
GAATAATTCGAACCTATTAAGAAAGATCACAAGAACCTAACTATTGTTAAGGTTAACATT
GACGAAGAAGATTTAGAATCTATTGTTGAATCTCACAATGTTTCTTCTCTTCCTCACGTT
TTCTTATACCACAAGAAGACTGTTGTTAAATAATTCATTGGTAACCAAAAAGACCAATTA
TGGGAAATGGCTAAACTCAGTGATGCTAAGTGA

>TTHERM_00623050(protein)
MSHPYIEITSTKQFEDILEKNEYVLVDFFASWCGPCKILAEQFEPIKKDHKNLTIVKVNI
DEEDLESIVESHNVSSLPHVFLYHKKTVVKQFIGNQKDQLWEMAKLSDAK

>TTHERM_00623050(gene)
ATGTCTCATCCCTACATAGAAATTACAAGCACCAAGCAATTCGAAGATATTCTCGAAAAG
AACGAATATGTTTTAGTTGATTTCTTTGCTTCCTGGTGTGGCCCTTGCAAAATTTTAGCT
GAATAATTCGAACCTATTAAGAAAGATCACAAGAACCTAACTATTGTTAAGGTTAACATT
GACGAAGAAGATTTAGAATCTATTGTTGAATCTCACAATGTTTCTTCTCTTCCTCACGTT
TTCTTATACCACAAGAAGACTGTTGTTAAATGTAATTTCATTTTCGACTTTAAAAGTCTA
TTAACTGATTTTAAAAAATAATTTTTAAATAATTTATAAAAATAGAATTCATTGGTAACC
AAAAAGACCAATTATGGGAAATGGCTAAACTCAGTGATGCTAAGTGA