Identifiers and Description

Gene Model Identifier

TTHERM_00444570

Standard Name

KHD3 (KH domain-containing protein 3)

Aliases

PreTt03825 | 51.m00191 | 3704.m00047

Description

Zinc knuckle family protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• RNA binding (IEA) | GO:0003723
• nucleic acid binding (IEA) | GO:0003676
• zinc ion binding (IEA) | GO:0008270

Domains

• ( PF00013 ) KH domain
• ( PF03107 ) DC1 domain
• ( PF00098 ) Zinc knuckle

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 11.2%

TetraMine Data

TTHERM_00444570

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_10900.1	9.997093137033517e-262	zinc knuckle family protein (6 68 aa)
Oxytricha	Contig8621.0.g10	2.0000236365077126e-43	KH domain
DictyBase	DDB_G0293554	3.001129784945559e-41	sf1 on chromosome: 6 position 3035802 to 3037515
SGD	YLR116W	7.002785992501305e-33	MSL5 Component of the commitme nt complex, which defines the first step in the splicing pat hway; essential protein that i nteracts with Mud2p and Prp40p , forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA
WormBase	WBGene00013808	3.998693556225637e-29	locus:sfa-1 status:Confirmed UniProt:G5EF97 protein_id :CAB55136.2
Stentor Coeruleus	SteCoe_3903	1.0530617357553812e-20

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00444570(coding)
ATGTCTAATCCAATTCCAATAGCACTAGGCGTCTTTGAAGGATAGGAAAATCTAGATTAA
TAAGAGTAAAATAAAGATAAAAAAGATAGTCAAAGCGAAAATAATTCTTAAAAAATTAAA
GATTCAGAGGAAGTCATTATCAGTGAAGAGATTGACAATGGTGGTTATTTTGATAGAACA
AATTACGATGTTTATAATGTTAAAAGGGATGGCTACTTCTTTGCAGATGAAGTTAAAGTT
GATGGTGAAACTATTTTCACAATTCCAATAGAGAAGCAATTAGAAGATAATGAAGACTTG
CCAAAAAGAAAATCAAGATGGGGTGATAGACCTTAAAGGAGAAGAAAAGTTTAAGTAAAC
CATATATTTAATCCTTTGCAAGGACTAACTACTGGAAATGGTCTTTTGTCTATTACAGCA
GATGGTTATAAGTATGGCTAATAATATCCTGATAAAAAAGAAGAAGAAGAGGAGAAATTT
TCAAGATGGGGACCTGAATACGAAAAGACTTTCCATCCTCCTCCTTTGAACTACATTCCT
CAAAATATTAACGATGATGATTTAGAATACATAATCAGACTCTACAGGTTAGACGAAATA
TAAAATAAAATGATTAATAAAATTCAAACACTCGAAGATGATTCTGATTGTAGGTCTCCA
TCTCCTGACCCAATTTACAATGAATAAGGTAAAAGAATCAACACTAGAGATTACAGAGAA
TAAGAGTCTTTGTAGAAAGAAAAATATAATTTAATAGAAGAAGCAATGAGAATTAATCCT
GCTTTTATTCCTCCTCACGATTTCAAGGTTTAGAAAAAGCAAAAGAAAATTTATCTACCA
GAACAAAATGCAGAATTATTAAAACAAAAAGTAATTGGACCTAAGGGTTAAACTCACAAA
AGACTTGAGTAGGAAAGTGGCTGTAAAATTAGTATTAAGGGTAAAGGCTCAGGAAACGGA
ATGAAGAGAGTAGAAAATGATTTCAATGATAAGCTTCATATTCTTTTGTAAGGTGATACT
GATGAATAATTAGAAAAGGGTGCTACACTCGTTGATGAAATTCTTAGAGGAGAAGATAAA
TCTAATGAAAATACTTTTAAGGGAGGAGATCTTGTTATCATTCATGATGTCCTCAATAGA
GATTTTTGTTCAAAATGCCATTAAACTGGACATAGAGATTTTGAATGTTAATCAAAGACC
ACTTTTAATAAGGTTGATGTCAAGTGTATTTATTGTGGAGATAAAGGCCATATTTCAGCT
GATTGTAAATTTAAGAGAGAGAGATAGCAGTAAAATAGAGAGAGAGGAAATGATGTAGAT
ATCAATACTTAATTCGAGTAATTTATAAATTAAGTTGAAGGAGATGATAGATTACTTAGT
AGCTTTGGTGGCAGAGCGAACTAAAATAAGTCAATTACAAATACTAGCTTTATTACTGAT
GCTATAGAAATAGATCCTAATCTTCTTATGATCAAAGCAGATGATAACCTTTACAAAAAT
ACAAAAGAACCAACATTTTCGAATGGACCTTCAGCTCCTTCTTATTCTAACGACTTCCAA
TAAGGAGGTTACAACAACAATTTCAATAAAAATAGAGACTATAGAAGGGAAACAAATGAT
TAATTTAATAAAAATAATGATAGATTTAATAGTTAGAGTGGCAGTAATAGATAATAAGAC
TCTTCTAGAGCACCTATACCTCCTCCTATCCTACCTCCAGGAAGTGATCATTTAGCCCCA
CCCTCATTTATGAATTAAAATACAATGGGTCATTTTGGTGGTTTACCCATGCCTGGTATA
GCTAATCCTTCAGCTATGCCACCACCTGGTATGCCAGGCAGTTTATATCCTCCTCCAATG
CCTCCAGGTGGTTATCCTATGTTTAATCCATATGCCCCACCAGGTTTTGGAGGTCTTCCT
CCTCCTATGTTCCCCCCACACCCTCACTTAAATGTTCCATACGGATATAATCCCTTATAT
CCATAAGGATATAATTAATAAAATTAACCACACAAATGA

>TTHERM_00444570(protein)
MSNPIPIALGVFEGQENLDQQEQNKDKKDSQSENNSQKIKDSEEVIISEEIDNGGYFDRT
NYDVYNVKRDGYFFADEVKVDGETIFTIPIEKQLEDNEDLPKRKSRWGDRPQRRRKVQVN
HIFNPLQGLTTGNGLLSITADGYKYGQQYPDKKEEEEEKFSRWGPEYEKTFHPPPLNYIP
QNINDDDLEYIIRLYRLDEIQNKMINKIQTLEDDSDCRSPSPDPIYNEQGKRINTRDYRE
QESLQKEKYNLIEEAMRINPAFIPPHDFKVQKKQKKIYLPEQNAELLKQKVIGPKGQTHK
RLEQESGCKISIKGKGSGNGMKRVENDFNDKLHILLQGDTDEQLEKGATLVDEILRGEDK
SNENTFKGGDLVIIHDVLNRDFCSKCHQTGHRDFECQSKTTFNKVDVKCIYCGDKGHISA
DCKFKRERQQQNRERGNDVDINTQFEQFINQVEGDDRLLSSFGGRANQNKSITNTSFITD
AIEIDPNLLMIKADDNLYKNTKEPTFSNGPSAPSYSNDFQQGGYNNNFNKNRDYRRETND
QFNKNNDRFNSQSGSNRQQDSSRAPIPPPILPPGSDHLAPPSFMNQNTMGHFGGLPMPGI
ANPSAMPPPGMPGSLYPPPMPPGGYPMFNPYAPPGFGGLPPPMFPPHPHLNVPYGYNPLY
PQGYNQQNQPHK

>TTHERM_00444570(gene)
ATGTCTAATCCAATTCCAATAGCACTAGGCGTCTTTGAAGGATAGGAAAATCTAGATTAA
TAAGAGTAAAATAAAGATAAAAAAGATAGTCAAAGCGAAAATAATTCTTAAAAAATTAAA
GATTCAGAGGAAGTCATTATCAGTGAAGAGATTGACAGTACGAGATAGAATTTCTTAATT
TAAAATAGATTGATCGCAATCACCTTCATCTTTAAATCCAAAATAAAGTTATAAAAGCAT
GCAGGCTAATTATAAAAAATAATTAGGCAGCAAGATTGAAGAGATTTATTTTAAGTTTTG
TATTTTAAAATAAAATAAGATTACTGGTTTAAAAAACTTAAAGATTCATTCAATAATTTG
AGGATTAAATATTTATTTGCAGATTTCAATCTAGCTTAAATTGCATTAAAAAAATAGTTT
ATCACAAAGAAAATTCTCTAATTTGAACTATTGATAGATGAATGATTGAAAGATTATAAA
CATATTTATATAGTTAAAACAATTAATATTAAATTTTTTATTTTTAAATTTATATATAGA
TGGTGGTTATTTTGATAGAACAAATTACGATGTTTATAATGTTAAAAGGGATGGCTACTT
CTTTGCAGATGAAGTTAAAGTTGATGGTGAAACTATTTTCACAATTCCAATAGAGAAGCA
ATTAGAAGATAATGAAGACTTGCCAAAAAGAAAATCAAGATGGGGTGATAGACCTTAAAG
GAGAAGAAAAGTTTAAGTAAACCATATATTTAATCCTTTGCAAGGACTAACTACTGGAAA
TGGTCTTTTGTCTATTACAGCAGATGGTTATAAGTATGGCTAATAATATCCTGATAAAAA
AGAAGAAGAAGAGGAGAAATTTTCAAGGTATTTTTTTTAAGACCATTCTTCTTAGTATTT
TAATTTTAATATTGTAAAAAGATGGGGACCTGAATACGAAAAGACTTTCCATCCTCCTCC
TTTGAACTACATTCCTCAAAATATTAACGATGATGATTTAGAATACATAATCAGACTCTA
CAGGTTAGACGAAATATAAAATAAAATGATTAATAAAATTCAAACACTCGAAGATGATTC
TGATTGTAGGTCTCCATCTCCTGACCCAATTTACAATGAATAAGGTAAAAGAATCAACAC
TAGAGATTACAGAGAATAAGAGTCTTTGTAGAAAGAAAAATATAATTTAATAGAAGAAGC
AATGAGAATTAATCCTGCTTTTATTCCTCCTCACGATTTCAAGGTACTAAACTTTTCAAT
AAAATAAAAAAGATATTTAAGTTTATTTATTTAAAAATTTTAAGAAAAAAGCTTACAATA
AATGCACTAAAATTAGAAAATATTATTTAAATTTTAAAACAAATTATTAAAATAATTATA
AATTCAAAAATTGTTTTACAATGTTAGATTAAAATTGAAGAAAAAGTGAAAGCAATTAAA
AAGATTAAAAATCTATTTATAATTTAAATAGCGAGATATTTATTACATAGACAAAACTCA
AAATATTATTTTAATAATTTAATAATATATTTCTAACAAAATTTAATAATACAATGAGCT
TCAATAATTTAGAATCTATCTATTATTTAATAAAGAAAGAATTGTCAAAAACAAACATAT
TTATTACTAAAAATTTACATTTTAACTTTCTTAATTAATATAGGTTTAGAAAAAGCAAAA
GAAAATTTATCTACCAGAACAAAATGCAGAATTATTAAAACAAAAAGTAATTGGACCTAA
GGGTTAAACTCACAAAAGACTTGAGTAGGAAAGTGGCTGTAAAATTAGTATTAAGGGTAA
AGGCTCAGGAAACGGAATGAAGAGAGTAGAAAATGATTTCAATGATAAGCTTCATATTCT
TTTGTAAGGTGATACTGATGAATAATTAGAAAAGGGTGCTACACTCGTTGATGAAATTCT
TAGAGGAGAAGATAAATCTAATGAAAATACTTTTAAGGGAGGAGATCTTGTTATCATTCA
TGATGTCCTCAATAGAGATTTTTGTTCAAAATGCCATTAAACTGGACATAGAGATTTTGA
ATGTTAATCAAAGTAAAAATGTTGCAATTTATAAACATTAATTTAATGATTTCTTTTTTT
AAAAAAAATAGGACCACTTTTAATAAGGTTGATGTCAAGTGTATTTATTGTGGAGATAAA
GGCCATATTTCAGCTGATTGTAAATTTAAGAGAGGTAAATAATAAAAATAAAATAATATG
ATAAATATGAAAAAATCTTTTATCATAAATATAGAGAGATAGCAGTAAAATAGAGAGAGA
GGAAATGATGTAGATATCAATACTTAATTCGAGTAATTTATAAATTAAGTTGAAGGAGAT
GATAGATTACTTAGTAGCTTTGGTGGCAGAGCGAACTAAAATAAGTCAATTACAAATACT
AGCTTTATTACTGATGCTATAGAAATAGATCCTAATCTTCTTATGATCAAAGCAGATGAT
AACCTTTACAAAAATACAAAAGAACCAACATTTTCGAATGGACCTTCAGCTCCTTCTTAT
TCTAACGACTTCCAATAAGGAGGTTACAACAACAATTTCAATAAAAATAGAGACTATAGA
AGGGAAACAAATGATTAATTTAATAAAAATAATGATAGATTTAATAGTTAGAGTGGCAGT
AATAGATAATAAGACTCTTCTAGAGCACCTATACCTCCTCCTATCCTACCTCCAGGAAGT
GATCATTTAGGTAGCTAAAATTTCATTTCATGTATTATTAAAAATTAACTATTTTCTAAA
TAATTAGCCCCACCCTCATTTATGAATTAAAATACAATGGGTCATTTTGGTGGTTTACCC
ATGCCTGGTATAGCTAATCCTTCAGCTATGCCACCACCTGGTATGCCAGGCAGTTTATAT
CCTCCTCCAATGCCTCCAGGTGGTTATCCTATGTTTAATCCATATGCCCCACCAGGTTTT
GGAGGTCTTCCTCCTCCTATGTTCCCCCCACACCCTCACTTAAATGTTCCATACGGATAT
AATCCCTTATATCCATAAGGATATAATTAATAAAATTAACCACACAAATGA