Identifiers and Description

Gene Model Identifier

TTHERM_00079230

Standard Name

IC3

Aliases

PreTt10169 | 5.m00520 | 3828.m01432 | IC69

Description

Intermediate chain subunit of ciliary three-headed outer arm dynein (OAD)"

Genome Browser (Macronucleus)

GBrowse

Genome Browser (Micronucleus)

GBrowse

Gene Ontology Annotations

Cellular Component

Molecular Function

Biological Process

Domains

  • ( PF00400 ) WD domain, G-beta repeat
  • ( PF04702 ) Vicilin N terminal region

Gene Expression Profile

  • Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.1%

TetraMine Data

TTHERM_00079230

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

SourceIdentifierScoreDescription
Stentor CoeruleusSteCoe_10220
Tetrahymena borealisEI9_07016.19.997093137033517e-262hypothetical protein (659 aa)
OxytrichaContig21752.0.g209.997093137033517e-262WD domain, G-beta repeat
DictyBaseDDB_G02808493.000555717977434e-27dicA on chromosome: 3 position
3856978 to 3859184
WormBaseWBGene000159273.001003044337619e-17locus:dyci-1 status:Confirme
d UniProt:O45087 protein_i
d:CCD64991.1
SGDYDR128W0.000005000363240844623MTC5 Subunit of the SEA (Seh1-
associated) complex, a coatome
r-related complex that associa
tes dynamically with the vacuo
le; has N-terminal WD-40 repea
ts and a C-terminal RING motif
; mtc5 is synthetically sick w
ith cdc13-1

General Information

No Data fetched for General Information

Associated Literature

  1. Ref:16933976: Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA,
  2. Ref:10970738: Strauss-Soukup JK, Strobel SA (2000) A chemical phylogeny of group I introns based upon interference mapping of a bacterial ribozyme. Journal of molecular biology 302(2):339-58
  3. Ref:10101194: Ikawa Y, Naito D, Aono N, Shiraishi H, Inoue T (1999) A conserved motif in group IC3 introns is a new class of GNRA receptor. Nucleic acids research 27(8):1859-65

Sequences

>TTHERM_00079230(coding)
ATGGCTGAGTATTTCACATATTCAAAGAAAAGAAAGGAATTCAACAATCCTATTAACTTT
TAGGACACCGAGACCAGATATGGTGGCATTTAAAATTAAGTTGTCAATATCAATCAATAT
GTTTAGCGTAATCCAAACTTTATTGACTTAGATAACATAGCAGAACTCTCAGAGCATTCA
GTAAATACAGAAAGAGTTAAAACTGGTGATCGTGGTATGAGTCACAAAGAAGGAGGTTGG
CCCGGAAATGTTGATCCTAATGAAGCTTAAGAAACTGGTAGATTTAAAAAAAGAATTGAA
AAGGATACCAGTTTCCCTCAAGCTGTTAAAGATTTAAAGGAAGGAGTTGAAAAGTGCATT
TATTAAAATAATTAAATCGACCTCTTAGAGGAATATTTTGAAGGTGAAACATCTGAACAC
GTTGTTGAGAATCTCTCTTCAAAGACCCTCATGCTTTTCAAGGATGAAAAAGAAATTTGT
AAAAGATCTGTTTCTGAAATTTCATGGCATCCTGAAGGACCTACTAAGGTAGCTGTTTCT
TATGCTATTATGCGTTTCTAATAGATGCCTGAAAAAATGCCCACTTAAGCTTACGTTTGG
GATTTGTTGAACCCTAATTCCCCTGAAATTAAATTAATGTCTCCTTCAGCTGTAACAAAT
ATTTCATACAATTAAAAAATACCTGATCAAATTGGTGGTGGTTGCTACAACGGTCTTCTT
GCTGTTTGGGATGGAAGAAAAGGTGAAAACCCTATTATGATTTCTCCAGTCGAAAACTCC
CATTATGAACCTGTCACCCATTTCCATTGGTTGATGAGCAAAACAGGTAGTGAATGTGTT
ACAACAAGTACTGATGGTAAAGTTATGTGGTGGGATACTAGAAAATTCGAAGCTGGTCCT
GTTGAAAAGCTAAATATTATTGAAGGTTTAGGTGAAAATGAAGAAATCATTGGTGGTACT
GCTCTTGAATACAACGTCGAAGCTGGTCCTAGTAAATTTTTGATTGGTACAGAATCAGGT
TCAATTTTAACTGCAAACAAGAAACTTAAAAAGCCTGTTGAAATCACAACTAGATATGGA
TTAGATCAAGGCAGACATTTAGGTCCTGTTTACAGTATTAATAGATCTAACTAAAATCCT
AAATATTTCTTATCAGTTGGTGACTGGTCTTGTAAAATATGGGTTGAAGATCTTAAAACT
CCTATCATCAGAACCAAATATCATGGTTCTTACCTTTCTGATGGTTGCTGGTCTCCCACT
AGATCAGGTGCCTTCTTCTTAGTTAGGAGAGATGGTTGGATGGATGTCTGGGATTACTAC
TACAGACAAAACGAAATCGCTTTCTCTCACAAAGTTAGTGACTCACCTTTAACATGCATT
AAAATTAACTAAACTGGTGGTGCCTACCATAATTCTGGTAAGCTCTGTGCTATTGGTGAT
TAAGATGGTACTGTTACTATTCTTGAATTATGTGATTCTCTTTACACAATGTAACCCAAG
GAAAAAGATATTATTAACGAAATGTTCGAAAGAGAATACAGAAAGGAAAAGAACTTGGAA
ACAATCAAAAAGTAATAGGAATTAGCTAAAAGATAAGTTTAAAAAGATATGGGTAGCCAA
AAAGAAAAGTGGGAAAAGAAGAAACTTGAAATGATTGAAACTGCTGAAGCCAGTTTCCAT
GAAAATCTTGCTAAGAACCCTGTTAATGAAGAAGAATTTAATGAACTTGACTCACCTTCT
GAAAAGAGAAAGAAAACTAATTAAAATTAAGGTAGAGAATAAGAAGAATAAAGCAGAGAA
GAATAAGAAGCATCTGGTAACTTCAATTAACAACAATAGTAATAATAAGAAGAAGAATAG
TAGTAAGAAGGGGAATAATAACACCATTAAAATCAAGAACACCAAAACGGATAAGGACAT
GAAAATGGCTAAGAGGAAGGTGAAGAAAATGGTGAAGAAGGTAATTAATAAGAAAATGAA
GGATAAGAAGAAAACGAATAATAATAAGAATGA


>TTHERM_00079230(protein)
MAEYFTYSKKRKEFNNPINFQDTETRYGGIQNQVVNINQYVQRNPNFIDLDNIAELSEHS
VNTERVKTGDRGMSHKEGGWPGNVDPNEAQETGRFKKRIEKDTSFPQAVKDLKEGVEKCI
YQNNQIDLLEEYFEGETSEHVVENLSSKTLMLFKDEKEICKRSVSEISWHPEGPTKVAVS
YAIMRFQQMPEKMPTQAYVWDLLNPNSPEIKLMSPSAVTNISYNQKIPDQIGGGCYNGLL
AVWDGRKGENPIMISPVENSHYEPVTHFHWLMSKTGSECVTTSTDGKVMWWDTRKFEAGP
VEKLNIIEGLGENEEIIGGTALEYNVEAGPSKFLIGTESGSILTANKKLKKPVEITTRYG
LDQGRHLGPVYSINRSNQNPKYFLSVGDWSCKIWVEDLKTPIIRTKYHGSYLSDGCWSPT
RSGAFFLVRRDGWMDVWDYYYRQNEIAFSHKVSDSPLTCIKINQTGGAYHNSGKLCAIGD
QDGTVTILELCDSLYTMQPKEKDIINEMFEREYRKEKNLETIKKQQELAKRQVQKDMGSQ
KEKWEKKKLEMIETAEASFHENLAKNPVNEEEFNELDSPSEKRKKTNQNQGREQEEQSRE
EQEASGNFNQQQQQQQEEEQQQEGEQQHHQNQEHQNGQGHENGQEEGEENGEEGNQQENE
GQEENEQQQE


>TTHERM_00079230(gene)
GATTAATACAATAAATAAATAATAAATAGAAAAAGAAAAAAGAAACTAACAATCAATCAA
TTAAATAATTAATTAATTATATAATTAATTTCTTATATATTTTCTTAATAAAAAAGTTAT
CTATTTATAATCACTTAAATAAAATATATGGCTGAGTATTTCACATATTCAAAGAAAAGA
AAGGAATTCAACAATCCTATTAACTTTTAGGACACCGAGACCAGATATGGTGGCATTTAA
AATTAAGTTGTCAATATCAATCAATATGTTTAGCGTAATCCAAACTTTATTGACTTAGAT
AACATAGCAGAACTCTCAGAGCATTCAGTAAGTTTTTTTTAAATGGCCTAAAATACTAAT
AGTTTTAGAAGAAACAACAAAATTGAGTCTTTAAGTAAAAAAATATTTTAAATATTAGGT
AAATACAGAAAGAGTTAAAACTGGTGATCGTGGTATGAGTCACAAAGAAGGAGGTAATTG
GGAATTATTATTTATTTATAAAAAATAAAACAAGCATCTAACTAAAACAATAAACCAATC
ATAAAATAGATTTTGAACTAAATAAAATAGAATTTAAAAAATTAGATTAAAAAAAACTGA
TTTTAATTTTATATTAAATTTACTTTTTTTTATTTTAGGTTGGCCCGGAAATGTTGATCC
TAATGAAGCTTAAGAAACTGGTAGATTTAAAAAAAGAATTGAAAAGGATACCAGTTTCCC
TCAAGCTGTTAAAGATTTAAAGGAAGGAGTTGAAAAGTGCATTTATTAAAATAATTAAAT
CGACCTCTTAGAGGAATATTTTGAAGGTGAAACATCTGAACACGTTGTTGAGAATCTCTC
TTCAAAGACCCTCATGCTTTTCAAGGATGAAAAAGAAATTTGTAAAAGATCTGTTTCTGA
AATTTCATGGCATCCTGAAGGTAATTTAACATTAACATAATATGAATAAAAGTTTATTTG
ATTGTTTAGATTCATAAAGCATAAACACAAGCCAAATTTTATACTGAATCTAAAATTAAG
ACATTTTAAATTAACATATAATGCTTTTTTTTAGATTTAAATTGTTTTTATTTTAAAATT
AGGACCTACTAAGGTAGCTGTTTCTTATGCTATTATGCGTTTCTAATAGATGCCTGAAAA
AATGCCCACTTAAGCTTACGTTTGGGATTTGTTGAACCCTAATTCCCCTGAAATTAAATT
AATGTCTCCTTCAGCTGTAACAAATATTTCATACAATTAAAAAATACCTGATCAAATTGG
TGGTGGTTGCTACAACGGTCTTCTTGGTAATTATTTATTTAAGCATTATTTATTTTTACA
CAAATCTTAGTTTAATATAAATTTTTTTGAGCGCAAATCCTTTTAAATTTTGAAACGCTT
CTTAATTTAAAAATAATAATCAATTTTTTTTTGAATTTTTAATTATTTTTTTACAAAATA
TTAATTGACATTCTCTTAAAAATATTTTTAATTTTAATGTATTCAAGTTTTTATAATTAA
ATTATTTTATTTTAAATAGCTGTTTGGGATGGAAGAAAAGGTGAAAACCCTATTATGATT
TCTCCAGTCGAAAACTCCCATTATGAACCTGTCACCCATTTCCATTGGTTGATGAGCAAA
ACAGGTAGTGAATGTGTTACAACAAGTACTGATGGTAAAGTTATGTGGTGGGATACTAGA
AAATTCGAAGCTGGTCCTGTTGAAAAGCTAAATATTATTGAAGGTTTAGGTGAAAATGAA
GAAATCATTGGTGGTACTGCTCTTGAATACAACGTCGAAGCTGGTGTAATTAAATAATTA
AATAAATAAATTATTAAAGGAAAGAAAGAAAAAAAGAAATAAGAGTTATAAAAATAAATA
ATTTTATTAAATTAATGAATGAAAGAATAGAGTTAAAAATTATCTCATTGAATTATATAA
AAAAATATTTTATTAATATTAATTTTTAAATTATGAACAGCCTAGTAAATTTTTGATTGG
TACAGAATCAGGTTCAATTTTAACTGCAAACAAGAAACTTAAAAAGCCTGTTGAAATCAC
AACTAGATATGGATTAGATCAAGGCAGACATTTAGGTCCTGTTTACAGTATTAATAGATC
TAACTAAAATCCTAAATATTTCTTATCAGTTGGTGACTGGTCTTGTAAAATATGGGTTGA
AGATCTTAAAACTCCTATCATCAGAACCAAATATCATGGTTCTTACCTTTCTGATGGTTG
CTGGTCTCCCACTAGATCAGGTGCCTTCTTCTTAGTTAGGAGAGTAATTAGTTTTATTGA
ATGTTTTTATTCAAATTAATAATGAAAATTAATTAATAGGATGGTTGGATGGATGTCTGG
GATTACTACTACAGACAAAACGAAATCGCTTTCTCTCACAAAGTTAGTGACTCACCTTTA
ACATGCATTAAAATTAACTAAACTGGTGGTGCCTACCATAATTCTGGTAAGCTCTGTGCT
ATTGGTGATTAAGATGGTAAACAATCAGATAAATTTTTTATTGTTGTAAGTATTAATTTT
TATTGTTAAAAAAATAGGTACTGTTACTATTCTTGAATTATGTGATTCTCTTTACACAAT
GTAACCCAAGGAAAAAGATATTATTAACGAAGTAAATAGTTTTGAATTAAAAGTTTAAAT
AATTAAAAAATAATATAAATAAATGATAGATGTTCGAAAGAGAATACAGAAAGGAAAAGA
ACTTGGAAACAATCAAAAAGTAATAGGAATTAGCTAAAAGATAAGTTTAAAAAGATATGG
GTAGCCAAAAAGAAAAGTGGGAAAAGAAGAAACTTGAAATGATTGAAACTGCTGAAGCCA
GTTTCCATGAAAATCTTGCTAAGAACCCTGTTAATGAAGAAGAATTTAATGAACTTGACT
CACCTTCTGAAAAGAGAAAGAAAACTAATTAAAATTAAGGTAGAGAATAAGAAGAATAAA
GCAGAGAAGAATAAGAAGCATCTGGTAACTTCAATTAACAACAATAGTAATAATAAGAAG
AAGAATAGTAGTAAGAAGGGGAATAATAACACCATTAAAATCAAGAACACCAAAACGGAT
AAGGACATGAAAATGGCTAAGAGGAAGGTGAAGAAAATGGTGAAGAAGGTAATTAATAAG
AAAATGAAGGATAAGAAGAAAACGAATAATAATAAGAATGA