Identifiers and Description

Gene Model Identifier

TTHERM_00483490

Standard Name

IBD2 (Interactive BromoDomain Protein 2)

Aliases

PreTt06283 | 58.m00255 | 3719.m00109 | Brop-6

Description

Bromodomain containing protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF00439 ) Bromodomain

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 9.9%

TetraMine Data

TTHERM_00483490

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_14230.1	3.0001680331469735e-143	bromodomain containing protein (231 aa)
Oxytricha	Contig18584.0.g108	2.00017271388466e-38	Bromodomain
DictyBase	DDB_G0293800	3.9992896861436003e-19	DDB_G0293800 on chromosome: 6 position 3334534 to 3337072
Stentor Coeruleus	SteCoe_3545	3.1391327920480296e-17
WormBase	WBGene00017423	4.0002685161515803e-16	status:Confirmed UniProt:O76 561 protein_id:CCD69431.1
SGD	YDL070W	0.00000000000001000191320216021	BDF2 Protein involved in trans cription initiation at TATA-co ntaining promoters; associates with the basal transcription factor TFIID; contains two bro modomains; corresponds to the C-terminal region of mammalian TAF1; redundant with Bdf1p

General Information

No Data fetched for General Information

Associated Literature

1. Ref:29523178: Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J (2018) The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila. Epigenetics & chromatin 11(1):10

Sequences

>TTHERM_00483490(coding)
ATGTCAGCAAAAATAAAATCTACTTTAAAGTTTGTCACGGAAACATCAACCAGAAAAGAA
GATTATAAAAAAATGAATACAGTATTATAATCACTATTTGATAATAGCGACTCTCTAGAG
TTTAGATAACCTGTGGATTACTTAGCTTTAGGATTAACTGACTATCCAAATGTGGTTAAA
AAGCCAATGGACTTATCTACTGTTAAAAATAAAATAAATACACAAAGTTATGACACAATA
GAAGACTTTTTAGATGATATTTAATTAATTTGGGATAATTGTAAATTATATAATGCTTAA
GGATCTTGGATTTGGAAGTTAGCAGATAAATTAGACAAGTACTATAAAAAGCTTATAAAA
AATTATTTGCCTATGGTCCAAGTTCAATAAACAGTTGGAAAAAAAGAGAAGAAAGATGAT
AAAGCAAGCAAATAATAAGATGTGTATATTGATAATTTTTAAGAAGAAAAAAGCTCATTT
ACTGCTAAAATTAAATAACTTACAGAAGAATAGTTAGGTAGTATAGTAGAATAAATTAGA
TTAGAAAATCCTTAAGCATTTATAAGATTAGATAATAAAAAGTTATAAGTTATTGTTGAT
AGCATCAGTTTTGAATCTTTATAAAATTATAATACTTAAATCGATAACTGGTTAATCCCT
GTTAAGACTACAAATAAAAGAAGTAAAAATAATTGA

>TTHERM_00483490(protein)
MSAKIKSTLKFVTETSTRKEDYKKMNTVLQSLFDNSDSLEFRQPVDYLALGLTDYPNVVK
KPMDLSTVKNKINTQSYDTIEDFLDDIQLIWDNCKLYNAQGSWIWKLADKLDKYYKKLIK
NYLPMVQVQQTVGKKEKKDDKASKQQDVYIDNFQEEKSSFTAKIKQLTEEQLGSIVEQIR
LENPQAFIRLDNKKLQVIVDSISFESLQNYNTQIDNWLIPVKTTNKRSKNN

>TTHERM_00483490(gene)
ATGTCAGCAAAAATAAAATCTACTTTAAAGTTTGTCACGTAATTAGTTAAGCTTATAGTT
AGAGTTGTTAGGAATGACTAAAGCATAATTCTATTTAGAAATTGACATTCACAATTTAAA
AAGGCGTTATCGAAGTTAATATTTATTAATTATTTTCAAAAGGGAAACATCAACCAGAAA
AGAAGATTATAAAAAAATGAATACAGTATTATAATCACTATTTGATAATAGCGACTCTCT
AGAGTTTAGATAACCTGTGGATTACTTAGGTAAAACGTTTACTTCATTAGAATATGCTTT
TTTAACTTTTAATCAATAAAATTTAGCTTTAGGATTAACTGACTATCCAAATGTGGTTAA
AAAGCCAATGGACTTATCTACTGTTAAAAATAAAATAAATACACAAAGTTATGACACAAT
AGAAGACTTTTTAGATGATATTTAATTAATTTGGGATAATTGTAAATTATATAATGCTTA
AGGATCTGTAAATATTTTATTTATTAAGATACTTATAAACAAATATGATTAGTTATCGAT
ACATAAATATATGTAAATCTTTTAAATAATTCATTTAATTATTAACAGTGGATTTGGAAG
TTAGCAGATAAATTAGACAAGTACTATAAAAAGCTTATAAAAAATTATTTGCCTATGGTC
CAAGTTCAATAAACAGTTGGAAGTAAATTAATTTACATATTTACTAAATATTGATCGATG
ATAAATTTTTAAAATTAAAATATTAGAAAAAGAGAAGAAAGATGATAAAGCAAGGTAAAC
TTAATTTTTTGAATGAGATAATGAACAAAGAATTTTTAAAAGAAAGATAATGAAATTGAT
TAATCTTTTTTATTAAGGTATTTTAATGAGCTAAAATATTTTTTATAAATTAGCAAATAA
TAAGATGTGTATATTGATAATTTTTAAGAAGAAAAAAGCTCATTTACTGCTAAAATTAAA
TAACTTACAGAAGAATAGTTAGGTAGTATAGTAGAATAAATTAGATTAGAAAATCCTTAA
GCATTTATAAGATTAGATAATAAAAAGTTATAAGTTATTGTTGATAGCATCAGTTTTGAA
TCTTTATAAAATTATAATACGTAAATTTTGAATATTTTTTGAAAACCTATTGAAATTATT
TCTATAAAAATAGTTAAATCGATAACTGGTTAATCCCTGTTAAGACTACAAATAAAAGAA
GTAAAAATAATTGA