Identifiers and Description

Gene Model Identifier

TTHERM_00729230

Standard Name

IBD1 (Interactive BromoDomain Protein 1)

Aliases

PreTt07324 | 118.m00152 | 3739.m00074 | Brop-5

Description

Bromodomain containing protein. Member of the SWI/SNF, SAGA, SWR complexes and a putative HMT complex during vegetative growth. Member of the SAGA and SWR complex during conjugation at 5 hours.

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

• ( PF00439 ) Bromodomain

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 9.9%

TetraMine Data

TTHERM_00729230

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_17985.1	3.998941839720987e-159	bromodomain containing protein (274 aa)
Oxytricha	Contig18584.0.g108	6.000354955737408e-39	Bromodomain
DictyBase	DDB_G0270170	0.0000000000000030004923591262316	DDB_G0270170 on chromosome: 1 position 4360881 to 4366105
Stentor Coeruleus	SteCoe_26039	0.00000000000003442477108469977
SGD	YGR252W	0.0000000000008001317446409227	GCN5 Acetyltransferase, modifi es N-terminal lysines on histo nes H2B and H3; acetylates Rsc 4p, a subunit of the RSC chrom atin-remodeling complex, alter ing replication stress toleran ce; catalytic subunit of the A DA and SAGA histone acetyltran sferase complexes; founding me mber of the Gcn5p-related N-ac etyltransferase superfamily; m utant displays reduced transcr iption elongation in the G-les s-based run-on (GLRO) assay
WormBase	WBGene00017423	0.000000000006001570085597868	status:Confirmed UniProt:O76 561 protein_id:CCD69431.1

General Information

No Data fetched for General Information

Associated Literature

1. Ref:31664892: Saettone A, Ponce M, Nabeel-Shah S, Fillingham J (2019) RACS: rapid analysis of ChIP-Seq data for contig based genomes. BMC bioinformatics 20(1):533
2. Ref:29523178: Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J (2018) The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila. Epigenetics & chromatin 11(1):10

Sequences

>TTHERM_00729230(coding)
ATGTCAGGTTTTAAGTCTTCTCTTAAATTAAACTAGCATACTAATATAGGAAAAGAAGAA
CTCAAAAAGCTAAATCAAATGCTAAGTTAGCTCTTGCAAAACAATGATTCAATTGAATTT
AGATAAGCAGTTGATTGGAAAGCTTTGGGTTTGATGGACTATCCAAATATTATTAAATAC
CCCATGGATTTAGGCACATGTAAAGAAAAGTTAAAGAATAATGAATACAACTTCGTCGAA
GATTGCCTTGATGATATATAAATAGTTTGGGATAACTGTAAAAATTATAATGCTGAAGGA
TCTTGGATTTATAAATTAGCAGAAAAGTTGGAAAAGCACTTTAAAAATATGATTAAGAAT
TATCTCCCTTCCATATAATTTATGAATGCTGTAGTCAAAAAGGAAAAGCTCTCCTAGATG
AAGATTAATCAAGATGAGAATAGTTCATCTCAAAATGGAGACTAACCAACTCCAGCTAAT
AATACAACTAATGGAAACAAAAATAATGATGCAAATAATGGTACAAGCTAGAATTAAAAT
TAAATATATCAAGAAGAAGAAGCCAGTGAATCTATAACATCTTAAGATAAAATATTATTC
TCCTAGAAAATAAAGATGCTACCCACTGAATAGCTCGGTATGATAGTACTTATGATTTAG
AATAGTGCTTCTTAAGCATTTAAAGATATTGATAAAGAAAAATGTTAGATTCTAGTAGAC
TAAATAGATCCAGAAACATTTAAGAAAATTAATCAGTAAATCGATTTATGGAATGTTAGT
ACTGAAACTACTACAAAGAGAGTGAAGATTTGA

>TTHERM_00729230(protein)
MSGFKSSLKLNQHTNIGKEELKKLNQMLSQLLQNNDSIEFRQAVDWKALGLMDYPNIIKY
PMDLGTCKEKLKNNEYNFVEDCLDDIQIVWDNCKNYNAEGSWIYKLAEKLEKHFKNMIKN
YLPSIQFMNAVVKKEKLSQMKINQDENSSSQNGDQPTPANNTTNGNKNNDANNGTSQNQN
QIYQEEEASESITSQDKILFSQKIKMLPTEQLGMIVLMIQNSASQAFKDIDKEKCQILVD
QIDPETFKKINQQIDLWNVSTETTTKRVKI

>TTHERM_00729230(gene)
ATGTCAGGTTTTAAGTCTTCTCTTAAATTAAACTAGTAATATTGATACCATTTTTTAGAT
TTAGCATAAATAAATTTATTTTATAGCAATTCAATGCTTAAAGAGAGCGAAATTAGTTCA
AATGCAGCTTATTAACTTTTTAATATAATGACCATCATTATTGATTTTTATTTTTAAAAA
TAGGCATACTAATATAGGAAAAGAAGAACTCAAAAAGCTAAATCAAATGCTAAGTTAGCT
CTTGCAAAACAATGATTCAATTGAATTTAGATAAGCAGTTGATTGGAAAGGTAATTTTGA
ATTAATTTTAGAGATTTGGCAAATTTAACTCTATTATTTTGAGATATTTCAAATAATCGA
TTTAAATAGATCAATTAAATTTTGCATACATAAATTATTTTGTGAGTACTAATCAAAATT
GATAATAAAATAAGCTTTGGGTTTGATGGACTATCCAAATATTATTAAATACCCCATGGA
TTTAGGCACATGTAAAGAAAAGTTAAAGAATAATGAATACAACTTCGTCGAAGATTGCCT
TGATGATATATAAATAGTTTGGGATAACTGTAAAAATTATAATGCTGAAGGATCTGTAAT
TAATTAAATTTCAATTATTTAATATTCTTTTAAAAAGAGTTTTTTTTAATTCAAAGATAT
TTTCTAATATTTTTAAAGAAAACAAAAATAATATAATCAAATTAAATCAAATCAATTACA
ATTATACAACCAAAAACAAACCCCTTTTATCTATTTATTTATAATAGCTGTTCTGAAATT
ATTATTTTTATTTTAAATAAAAATATTATTAACTGATAATAAAAATTTTTTAAATTTAAG
ATATTTTTGATTTTTTATAAAGCTAATATTTCGCAGTAACAAAATAAATGGATTTAAATA
TTTTATATATATTTATATCAAGCTTTAAAAATAAAATAAATTAATCAATGCTAATTTTCA
AGTACCAATAAAAAATGAATAACTAAAAAATAAATTTTATAATTTTAAATGTAGGTTTAT
ATAAAAAAATAAAATCAAAAGCAAAGTATAAATCTATTAGCAAACAATTTTTAAAAACAT
GATTATTTGATTAATGAGAAGATTTTCACAAGATTTAATTTACAAAATAAATATATTTAA
AATAATATTAAAATGAATTTATTTTTCATTTTTTTCAAATAATTTTTGAATGTATTTTGG
TTTTATGTAAAAATAAAATTATTATGATCAAAACCATACTGGTTTTAGTAAAAGAAGTTG
AAAAAATTTTTCTGTTTTTTATTTTTAAAAATTGTTTTTTTTTCTTTAAAAACTTGAAGA
AAAATATTTAAAATTATTTAATATCTCCTTGTTAATTAATAAATATTTATAATAATTTTT
AAAATAGTGGATTTATAAATTAGCAGAAAAGTTGGAAAAGCACTTTAAAAATATGATTAA
GAATTATCTCCCTTCCATATAATTTATGAATGCTGTAGTCAGTAAAAAATTAGTTTTTTG
ATAATGATTTATAGCTTTTAACTTGAATTTTGTGATTAAAATTTTTTTCATTAAATAGAA
AAGGAAAAGCTCTCCTAGATGAAGATTAATCAAGATGAGAAGTATCTTATTCATTTATTA
TTTAAGAATTAATGAATAATTTATTTTATAATTAATTATATAAGTAGTTCATCTCAAAAT
GGAGACTAACCAACTCCAGCTAATAATACAACTAATGGAAACAAAAATAATGATGCAAAT
AATGGTACAAGCTAGAATTAAAATTAAATATATCAAGAAGAAGAAGCCAGTGAATCTATA
ACATCTTAAGATAAAATATTATTCTCCTAGAAAATAAAGATGCTACCCACTGAATAGCTC
GGTATGATAGTACTTATGATTTAGAATAGTGCTTCTTAAGCATTTAAAGATATTGATAAA
GAAAAATGTTAGATTCTAGTAGACTAAATAGATCCAGAAACATTTAAGAAAATTAATCAG
TAAATTATTATAATTTGATATTAATTATTAGCTGATTTTATAGAAAAAATATAATTTAAA
TTTTATACTATTTTGAAAATATAAGTTTTTATTAATTTAATTATTATAACTAGGTAAATC
GATTTATGGAATGTTAGTACTGAAACTACTACAAAGAGAGTGAAGATTTGA