Identifiers and Description
Gene Model Identifier
TTHERM_00554600Standard Name
CPH3 (homolog of CAP-H or BRN1 condensin gene)Aliases
PreTt29267 | 72.m00190Description
condensin complex subunit 2; condensin subunit- kleisinGenome Browser (Macronucleus)
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Genome Browser (Micronucleus)
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Gene Ontology Annotations
No Data fetched for Gene Ontology Annotations
Domains
Gene Expression Profile
Change in Gene Expression
TMHMM
TMHMM
Signal Peptide
Signal Peptide Present?: No
Presense Probability: 10.3%
TetraMine Data
TTHERM_00554600
WebApollo
Fullscreen View
Tetrahymena Stock Center
No Data fetched for StockID
Homologs (v.2006 protein sequences)
Source Identifier Score Description Tetrahymena borealis EI9_07309.1 9.997093137033517e-262 hypothetical protein (774 aa)
Oxytricha Contig18145.0.g34 2.998577119979921e-31 Condensin complex subunit 2
DictyBase DDB_G0292066 7.996806159126539e-24 ncapH on chromosome: 6 positio
n 1141212 to 1144129
SGD YBL097W 0.00000000000004998767099442072 BRN1 Subunit of the condensin
complex; required for chromoso
me condensation and for cluste
ring of tRNA genes at the nucl
eolus; may influence multiple
aspects of chromosome transmis
sion
Stentor Coeruleus SteCoe_31169 0.0000000001026187963170189
General Information
No Data fetched for General Information
Associated Literature
- Ref:29237819: Howard-Till R, Loidl J (2018) Condensins promote chromosome individualization and segregation during mitosis, meiosis, and amitosis in Tetrahymena thermophila. Molecular biology of the cell 29(4):466-478
Sequences
>TTHERM_00554600(coding)
ATGGGTAAACCTTTAAGCGAGAAGCAAGTGAATTCATCCTAAAATTCACAAAATGCCCCT
AACTCGAGGGAAAAGTTTTTAGGAGCAAGCAAAAAAATAGCTAAAAAAAAGAAGGAAGTT
TCGCTGGACTTAGAAACCAATTAGGAAGAAGGGTTAGATTCCTTGAAGCTGCAATAGCAA
TCCAAGAAAGAAACATCAAAAGAAATAATATAAAGAAGGTAGAATTTATATGATAGGGAA
GAAGATGAGGAAATAGAAGAGGAATACAACATTGAAGATGCAAAATTGGCTAAAAACTCT
AATTAAGATAAAATCAGCGACATAATTGTAGGCCTTTTGTTAAAAAACAAAATCAACTCA
AAAAATGCATTTGAAGTCCCTGTTGTAAATGTTTTAGATCTCTCTGATTTTAAAAACATA
AATACAGATTTTGCTTGGAAGAAGCTCTCAAGCACTCTTGATGCAGGTGCAAGGATTTAT
GGATATCGTGTAGACAGTTTGCATAGTGACACTTATAAAATAAGAGGAGGCCTTAATCGC
TCAGAGGTTTAAGACATAAAAGATGCTAATAAAGCAAATGATTTAGAAGACCCACTTGAA
AAAGATGAAGAAATAGAAAAGAAATTGCAAAAGAAGAAATTCAAAGGAGGTGAGAGCACT
TTAGAAAAGAACTTAGCGAATATCAATGCCACCAAATACGATTTAGAATTCGACATTGAT
CCTCTATTTCAAAAAACCTCTGCAAAATTTGATGACTCAGGAGCTAAAGGACTTCTTATG
AATGCTATAGGAATAGATTCTGATGTCTCAATTTTGCTTGACTCATCTAAGCAGTAGCAA
CTTTGGAAGAGAAGAAAGCAAAAAAAAGCAACTTATGGTGAAATAGCAAGTTTAAATAGT
GGTAAACCAACAAATTATGAGAGTATCTTTAAGTGCTAGCTTTGTCCCGAAATGACTAAT
TTGGCTCTAGACATGAGAAATAATTCAAAGCAGATCTTTGATGTGTCAAGAATAAGAGAA
AACAGGAGAACAAACTTCTTGATTTCTACAAACTCTGAAATTTCAATGTAAAATAAGCTT
ATAAACGAAATAGAAGAAGGTGAGAGAGAAATCATGCAAGAAATTGATGCAGCTATTTTG
AATTAGGTTGATGATTATTTAGAACCTCTTGAAAAAGAGTAAATACTCTTATAAGATAAT
CCTGCTTCATTCAATGCTGCAAATCTTTCAAACAGCTTTAATCATAACTTGATAACCACC
AATCCTCATGGATACGACGACTACAACGATTAAATAATTCCAGAGTAAGATGATATTCCT
CTTGAAGATGTATATAACGAAAAGAATGCATTAAACCTTGACAAATTCAATTCAATCGAA
GAAGAGCATGACAATACAATTACAGCATTAATTGGCGGAGGAGCTGCCACACTCAACACA
TCTATGAACTCACAGTCTATGAAGCCCCTTAACTTTTTGAATTTAGAAGATAAGTTGCAG
ACAATTGGATTTGGGAAAGAATATATGAATGGATCAAGCATAAAGAATTGGATGCAACCT
GATGCATGGAAATTACCAAAAAAGTAAAACATCAAAATACGCATTTAGGACTTACTCCCA
GAGCTTAACATATTCAGGTCAAAAAAGCTAAAACAAAAGGGTGAGTGCGAAATTGACTTC
GACATCTCAAATGAAGAAGACTTTGATCAAGTTGTTGATCCCGATCCAATTAATGTAGAT
AAATATAAGAGTTCATATTCTTAAGAAATTGGGATGCTCCCAAAAGATTATCACATCTCT
AAGCAATTATTGAGCTCTTTTGGATTTAAAGATCCTGCTACCATATTCCATCGCTCTCGT
CTTGGAAGTGAATTAGATGAAGATGATCTAAATAACGACACAATTGACTACTACGATTAC
AACGGTGATAACAGAATATTGCCTGTAAATACCCATGTTCCCAGTACTATGTCAAAAGTG
CTGAATGAAATTGCAGAAAAATAGGCAATTAAGGCAAAGAACTAAATGCCCATCAAAGAG
CTCAAGACAAAACTATGGGACAAGCTGGAAAAAAAGATACCAATGACTTCAACCACAGGA
TAGAGCCAAAACGACTCTCTTTTCATCCAAAAAAGAGTTGAAGTTGAGGAAGAAGAAATT
CATTTTAGTGATGTTTACGATCAACTCCCTGACTTGATAGGCCTTCAAAATCGTAGCAGA
GTCTCTCTCTAAACATGCTTCGTTACAATTCTTCATCTTGCAAACGAAAAGACTCTCCGT
TTCGAGAGAACTGAGAGAGAAGGTGATTTCAAAATATCAAGAGACTAGAATTGA>TTHERM_00554600(protein)
MGKPLSEKQVNSSQNSQNAPNSREKFLGASKKIAKKKKEVSLDLETNQEEGLDSLKLQQQ
SKKETSKEIIQRRQNLYDREEDEEIEEEYNIEDAKLAKNSNQDKISDIIVGLLLKNKINS
KNAFEVPVVNVLDLSDFKNINTDFAWKKLSSTLDAGARIYGYRVDSLHSDTYKIRGGLNR
SEVQDIKDANKANDLEDPLEKDEEIEKKLQKKKFKGGESTLEKNLANINATKYDLEFDID
PLFQKTSAKFDDSGAKGLLMNAIGIDSDVSILLDSSKQQQLWKRRKQKKATYGEIASLNS
GKPTNYESIFKCQLCPEMTNLALDMRNNSKQIFDVSRIRENRRTNFLISTNSEISMQNKL
INEIEEGEREIMQEIDAAILNQVDDYLEPLEKEQILLQDNPASFNAANLSNSFNHNLITT
NPHGYDDYNDQIIPEQDDIPLEDVYNEKNALNLDKFNSIEEEHDNTITALIGGGAATLNT
SMNSQSMKPLNFLNLEDKLQTIGFGKEYMNGSSIKNWMQPDAWKLPKKQNIKIRIQDLLP
ELNIFRSKKLKQKGECEIDFDISNEEDFDQVVDPDPINVDKYKSSYSQEIGMLPKDYHIS
KQLLSSFGFKDPATIFHRSRLGSELDEDDLNNDTIDYYDYNGDNRILPVNTHVPSTMSKV
LNEIAEKQAIKAKNQMPIKELKTKLWDKLEKKIPMTSTTGQSQNDSLFIQKRVEVEEEEI
HFSDVYDQLPDLIGLQNRSRVSLQTCFVTILHLANEKTLRFERTEREGDFKISRDQN>TTHERM_00554600(gene)
ATGGTAGGTTTATTTATTTTAAATGATATTCAAAACAAATAGGACCTTTTATTTTCTAAA
AACTATAGGGTAAACCTTTAAGCGAGAAGCAAGTGAATTCATCCTAAAATTCACAAAATG
CCCCTAACTCGAGGGAAAAGTTTTTAGGAGCAAGCAAAAAAATAGCTAAAAAAAAGAAGG
AAGTTTCGCTGGACTTAGAAACCAATTAGGAAGAAGGGTTAGATTCCTTGAAGCTGCAAT
AGCAATCCAAGAAAGAAACATCAAAAGAAATAATATAAAGAAGGTAGAATTTATATGATA
GGGAAGAAGATGAGGAAATAGAAGAGGAATACAACATTGAAGATGCAAAATTGGCTAAAA
ACTCTAATTAAGATAAAATCAGCGACATAATTGTAGGCCTTTTGTTAAAAAACGTAATAC
ATATTTCTTATAAATTCAAATTTTAGAATTTTTTGTTAGCTTTGTTTTTTTTCTTGTCAT
TCATCAAAAATCTTATTATCATTAAAGAAAATCAACTCAAAAAATGCATTTGAAGTCCCT
GTTGTAAATGTTTTAGATCTCTCTGATTTTAAAAGTAAGCATTGTTTTTATGAGGAAGAA
ATACTTCTTCTAAAACACATATTTTTAATATAATTTTTGTTAAAAAAGACATAAATACAG
ATTTTGCTTGGAAGAAGCTCTCAAGCACTCTTGATGCAGGTGCAAGGATTTATGGGTATG
CTAATTAACGGATTTTAATTTTAATAATATTTAAATACAAACAAAAGATATCGTGTAGAC
AGTTTGCATAGTGACACTTATAAAATAAGAGGAGGCCTTAATCGCTCAGAGGTTTAAGAC
ATAAAAGGTAGTTAAGTTATTTATACATTATATAGTTGATTCTATAATAATATATATTAT
ATAGATGCTAATAAAGCAAATGATTTAGAAGACCCACTTGAAAAAGATGAAGAAATAGAA
AAGAAATTGCAAAAGAAGAAATTCAAAGGAGGTGAGAGCACTTTAGAAAAGAACTTAGCG
AATATCAATGCCACCAAATACGATTTAGAATTCGACATTGATCCTCTATTTCAAAAAACC
TCTGCAAAATTTGATGACTCAGGAGCTAAAGGACTTCTTATGAATGCTATAGGAGTATTT
ATTATTAAAATTTCAAATTATAAGAAAAATGAATAACAATGAAATAATCTTTAAAATAGA
TAGATTCTGATGTCTCAATTTTGCTTGACTCATCTAAGCAGTAGCAACTTTGGAAGAGAA
GAAAGCAAAAAAAAGCAACTTATGGTGAAATAGCAAGTTTAAATAGTGGTAAATAAAACT
AATAAGCAAATAATCGCTATGTATTTATTCTGAATTTTTTTTATCTAGGTAAACCAACAA
ATTATGAGAGTATCTTTAAGTGCTAGCTTTGTCCCGAAATGACTAATTTGGCTCTAGACA
TGAGAAATAATTCAAAGCAGATCTTTGATGTGTCAAGAATAAGAGAAGTAAAATAAATTA
TTTCAAAATATTAACATGATTAAATTGCTTAAAATTAATTTTATACAAATGCATTTATTT
GACTTATTTTTAAAATAATTTCCAGAACAGGAGAACAAACTTCTTGATTTCTACAAACTC
TGAAATTTCAATGTAAAATAAGCTTATAAACGAAATAGAAGAAGGTGAGAGAGAAATCAT
GCAAGAAATTGATGCAGCTATTTTGAATTAGGTTGATGATTATTTAGAACCTCTTGAAAA
AGAGTAAATACTCTTATAAGATAATCCTGCTTCATTCAATGCTGCAAATCTTTCAAACAG
CTTTAATCATAACTTGATAACCACCAATCCTCATGGATACGACGACTACAACGATTAAAT
AATTCCAGAGTAAGATGATATTCCTCTTGAAGATGTATATAACGAAAAGAATGCATTAAA
CCTTGACAAATTCAATTCAATCGAAGAAGAGCATGACAATACAATTACAGCAGTAGAGAA
TATTTTTAATTTCTTAACTTTTAACAATGCTAAATAAATAAATTAATAAATAATTCAAAT
AAAAAGTTAATTGGCGGAGGAGCTGCCACACTCAACACATCTATGAACTCACAGTCTATG
AAGCCCCTTAACTTTTTGAATTTAGAAGATAAGTTGCAGACAATTGGATTTGGGAAAGAA
TATATGAATGGATCAAGCATAAAGAATTGGATGCAACCTGATGCATGGAAATTACCAAGT
AATTCAAACCTCTATTTTAATTTTATTAAACAAATAGAGATATTCCTATCCTCATTCATC
AAAAAATTTATGGGGCAGGTCTTTCTTAAAATAAAAATAAAGTTTTAATATTTGTCTATT
CCACGAGGAATAATATGATCGGAACCTGATTAGGTGTTTTTAATTAGAATTTATAAGAAA
ACTCATAGAAATTTTGTGAAAGAATTTATCATTAACACTTTAATCAAAGAGCGATTTTAT
TTTTAATACTTCACAATTTATAAAAAGAAAAGTAAAACATCAAAATACGCATTTAGGACT
TACTCCCAGAGCTTAACATATTCAGGTCAAAAAAGCTAAAACAAAAGGGTGAGTGCGAAA
TTGACTTCGACATCTCAAATGAAGAAGACTTTGATCAAGTTGTTGATCCCGATCCAATTA
ATGTAGATAAATATAAGAGTTCATATTCTTAAGAAATTGGGATGCTCCCAAAAGATTATC
ACATCTCTAAGCAATTGTAATTAATTCATTTTTGTCATTTGGTACCTTAACTTAATTTGC
TTGTGTTTGCTTAATTATTTTGAGGGGTATCGAGATTATTAATTAATTTTTATTTGTGAT
TTGTATCTAGATAATTTGTTCATCTAAGATTCGCAATTGTTTTTATAATTCAAAAGCATT
ACTTTTGCAATTAATTTTTAATCTATTATGATTGACAAGTTGCTTTAGATTAAGATTAAT
AAATTTCTTTTCTTTTTTTCAGGGTACTTTCCTTACATTAATTAAGATATAATTTTTATG
ATGCTTTATTAGAAAAATATCCTAGCATACACACCTTAACCCAACCCAGAACAATTCAAC
ACAACAATTTTTGAAAAAGATATTTTTATGAGTTCAAATAATTTTATATTTTAATTGAAA
AAATAGATTGAGCTCTTTTGGATTTAAAGATCCTGCTACCATATTCCATCGCTCTCGTCT
TGGAAGTGAATTAGATGAAGATGATCTAAATAACGACACAATTGACTACTACGATTACAA
CGGTGATAACAGAATATTGCCTGTAAATACCCATGTTCCCAGTACTATGTCAAAAGTGCT
GAATGAAATTGCAGAAGTAAGATAAATTGATTAATCATTTATAGTTACATATTTATTGTT
GTATATTGATTTTCAAAATTAGTTAAGCAAATTTGAGTTTACATTTTATAAAAAAAATGA
AGTATTGTTGTTCATTAAAATAATTTGTTTCCTTATCCATTAAAGAAATAGGCAATTAAG
GCAAAGAACTAAATGCCCATCAAAGAGCTCAAGACAAAACTATGGGACAAGCTGGAAAAA
AAGATACCAATGGTAAAAATACAAGAAATTATTTTCCAACTTGATTTGTTTGTTTGTTTG
TTAGTTATTTTTTTTTTCTTATTGACTTTCCCCAATTTATAAATTAAAATATCTAAAAGC
CCAAATTATTTGCTATTTTATTTTTTAACCACAAATTTTCACTTTGTTATTCTAATTGAA
GTTGATTTTTCAATTTTATAAAAATAAATAAAATTTTGTTTAATTCAGATAACATTTACA
TACATACCTACAATCAATTGATTTTCGGCTATATTCAAGCTAAAATTCATTTGAATATTT
ATTTATTTATCAATAAAGACTTCAACCACAGGATAGAGCCAAAACGACTCTCTTTTCATC
CAAAAAAGAGTTGAAGTTGAGGAAGAAGAAATTCATTTTAGTGATGTTTACGATCAACTC
CCTGACTTGATAGGCCTTCAAAATCGTAGCAGAGTCTCTCTCTAAACATGCTTCGTTACA
ATTCTTCATCTTGCAAACGAAAAGACTCTCCGTTTCGAGAGAACTGAGAGAGAAGGTGAT
TTCAAAATATCAAGAGACTAGAATTGA