Identifiers and Description

Gene Model Identifier

TTHERM_00590200

Standard Name

CLP1 (pre-mRNA cleavage complex II protein Clp1)

Aliases

PreTt24135 | 81.m00192 | 3726.m00068

Description

pre-mRNA cleavage complex II protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

No Data fetched for Gene Ontology Annotations

Domains

No Data fetched for Domains

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 9.8%

TetraMine Data

TTHERM_00590200

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_16966.1	9.997093137033517e-262	hypothetical protein (505 aa)
Oxytricha	Contig11030.0.g71	4.000437458487249e-40	Molybdopterin guanine dinucleo tide synthesis protein B
WormBase	WBGene00010304	3.999970367130025e-21	locus:clpf-1 Protein clpf-1 status:Confirmed UniProt:P 52874 protein_id:CAA84329.1
DictyBase	DDB_G0285507	2.000769134519826e-18	clp1 on chromosome: 4 position 3327387 to 3328942
SGD	YOR250C	0.00000000030007160092483236	CLP1 Subunit of cleavage facto r I (CFI), involved in both th e endonucleolyitc cleavage and polyadenylation steps of mRNA 3-end maturation

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00590200(coding)
ATGATGGAAGAATAGTTCATATGCGATGAAAAAAAGTTTATTAGATAGGAGGTAGAAAAA
ATGAGGGAATTTTCATTTAACATAAATAATGAAGATGGTTTAAAACTCTTTCTGAAAGAG
GGTACTGCTGAAATCTTCGGTAGAGAATTACCACAATATACAATTTAATAATTTTAAAAG
GGAGATCGTTTTTCAATATTTACATGGACAGGCTGTGTACTCTATTTAGAATATATGAGT
CATTCTGACTTCTTTTAGTCTACAGATGAGTCACAGTATCCCATATATGCAAACATAAAT
TAATATTTACACGAAATGAGATCATAAGCATAAGATTAGCGTAAAATAGGCCCTAAAATT
TTAATATGTGGACCAAACTAAAGTGGAAAAACAACTGTTTCAAAGACACTGACTAACTAT
TGCTGTAAGCTGGGATGGACTCCTATTTTAGTTGATTTAGACCCTATGCTTAATACAGTG
ATGGCAGGAGGATGTATTGGAGCTTGTGTCTGCAAAGACTCTTATCCTACAAATGGAATA
GAAATTAAAAATAAAATTATATTCTTTCATGGATACAGTCGCATTCAATTAGGCCTTCTT
AAGAATTAGATAGAAGTCTTAGGAAACACAGTTCAAAAAAAGCTCTAAAATAACTTAGAA
TAATTCCTTAAAAAGCATAACTTGCAAACTGCTCCAGATGCAGAAGGAGCCTAACAGAAG
ACCAACAAATAAAAATATCCATCGTAATAAAATATTTAAAACTCAACTGCATAGATTAAA
CTACCATCAGGTGTCAACATAAATTAAATGCTGTTACTCCCTTAAGACAAGCAAATGTTT
TCAAGTGGATGCATAATTAATATGCCTCCTCTCTAATCTAGAGAATAGAAAGAAGTTATT
GACCTTATCATAAAACATTTTCAAGTTGATGTGATAATTGGTCTAGACGATTAAGTATTT
AATTCTTTAAAGCAAAACTAGCTTTTGACTAATGGATATAGTGTTATACGTACCACAAAA
CCTTCAGGATTAAAAACTAAAGAAGAGTCAGAGCTAGTTGAGGAAGCTAGAAAAATAAAT
TAAAAGCTCTTTTAATAGTACTTTAAAGGACTTAATAATGACATTGATTGTCATAATTAA
GAAGTTAACTTAAATGATTTACTTGTTTATAGATTAAAAATAAATGAAAAAAATAGCTTA
GCAAATACTTCAATGTAATAATAAAAGCAAATTTATGAAAGAGTTGATCTTTCCAAAGAA
AATGTGACAAAGAGTATAGTTGGCGTACTAAACCTTACAAGATCCTCTGTTGAAAAATTA
AAAGAAGAAGAAATATTTGAAAAAATATCTAAAAGTACTCTCAGTCTTTTGGTTCATTTA
TCAGATATGAGAACAAACCAGCCCTATGTACGTTTGTTTTTACCTGGGCTAAATATGGAA
AATATAATTAAAGAAAATGTATGTGTAATAGGAGACATAACATGGTTTGAATCATCAAGT
GATAAAAAAAAATGA

>TTHERM_00590200(protein)
MMEEQFICDEKKFIRQEVEKMREFSFNINNEDGLKLFLKEGTAEIFGRELPQYTIQQFQK
GDRFSIFTWTGCVLYLEYMSHSDFFQSTDESQYPIYANINQYLHEMRSQAQDQRKIGPKI
LICGPNQSGKTTVSKTLTNYCCKLGWTPILVDLDPMLNTVMAGGCIGACVCKDSYPTNGI
EIKNKIIFFHGYSRIQLGLLKNQIEVLGNTVQKKLQNNLEQFLKKHNLQTAPDAEGAQQK
TNKQKYPSQQNIQNSTAQIKLPSGVNINQMLLLPQDKQMFSSGCIINMPPLQSREQKEVI
DLIIKHFQVDVIIGLDDQVFNSLKQNQLLTNGYSVIRTTKPSGLKTKEESELVEEARKIN
QKLFQQYFKGLNNDIDCHNQEVNLNDLLVYRLKINEKNSLANTSMQQQKQIYERVDLSKE
NVTKSIVGVLNLTRSSVEKLKEEEIFEKISKSTLSLLVHLSDMRTNQPYVRLFLPGLNME
NIIKENVCVIGDITWFESSSDKKK

>TTHERM_00590200(gene)
ATGATGGAAGAATAGTTCATATGCGATGAAAAAAAGTTTATTAGATAGGAGGTAGAAAAA
ATGAGGGAATTTTCATTTAACATAAATAATGAAGATGGTTTAAAACTCTTTCTGAAAGAG
GGTACTGCTGAAATCTTCGGTAGAGAATTACCACAATATACAATTTAATAATTTTAAAAG
GGAGATCGTTTTTCAATATTTACATGGACAGGCTGTGTACTCTATTTAGAATATATGAGT
CATTCTGACTTCTTTTAGTCTACAGATGAGTCACAGTATCCCATATATGCAAACATAAAT
TAATATTTACACGAAATGAGATCATAAGCATAAGATTAGCGTAAAATAGGCCCTAAAATT
TTAATATGTGGACCAAACTAAAGTGGAAAAACAACTGTAAGTACTTCTTATTGATTTTCA
TTCAGTGATTGAATACTTAATATTTTAGTTAGAGCAAATTATATTATAAATGAAGATAAA
TTTGAGTAAATCTTTCGCTTGCATAGCAGCGAGAGAGTATTAAATTCATTTATTTTTGTT
ATAATTATTAGGTTTCAAAGACACTGACTAACTATTGCTGTAAGCTGGGATGGACTCCTA
TTTTAGTTGATTTAGACCCTATGCTTAATACAGTGATGGCAGGAGGATGTATTGGAGCTT
GTGTCTGCAAAGACTCTTATCCTACAAATGGAATAGAAATTAAAAATAAAATTATATTCT
TTCATGGATACAGTCGCATTCAATTAGGCCTTCTTAAGAATTAGATAGAAGTCTTAGGAA
ACACAGTTCAAAAAAAGCTCTAAAATAACTTAGAATAATTCCTTAAAAAGCATAACTTGC
AAACTGCTCCAGATGCAGAAGGAGCCTAACAGAAGACCAACAAATAAAAATATCCATCGT
AATAAAATATTTAAAACTCAACTGCATAGATTAAACTACCATCAGGTGTCAACATAAATT
AAATGCTGTTACTCCCTTAAGACAAGCAAATGTTTTCAAGTGGATGCATAATTAATATGC
CTCCTCTCTAATCTAGAGAATAGAAAGAAGTTATTGACCTTATCATAAAACATTTTCAAG
TTGATGTGATAATTGGTCTAGACGATTAAGTATTTAATTCTTTAAAGCAAAACTAGCTTT
TGACTAATGGATATAGTGTTATACGTACCACAAAACCTTCAGGATTAAAAACTAAAGAAG
AGTCAGAGCTAGTTGAGGAAGCTAGAAAAATAAATTAAAAGCTCTTTTAATAGTACTTTA
AAGGACTTAATAATGACATTGAGTATTTTTTTTTTCATTCATTCATTTTTTCTTTAAAAA
TTTTTAAGCTAAATCAAAATAAATTCATCATAAAAGTCTTTCAATTTATAAATTTTCTAA
CAATTTAATCTTTATGAAATGCTAATTTTAAGTCTCCTAATAAGATTACTAAAATAATTT
TATGAATAAGCAATAAATAAACTTCATACATAAAAATATTTAATTAATTAAATTCTAAAA
AATTAGGTTTTTTATATAAATTGCTTATATTTTTAATTAAGCAAAAGATTTATTTAAATA
TTTAATTATGTTTGAATAAACTCTTATATTTGCTTCAATTTAAGATGATTTTATTTTTGA
TATTTCAATTTCCAAATAAATTTAACGATTTTTAAGATATTTTAATAAAATTTTTATATT
ATAAAATAGTTGTCATAATTAAGAAGTTAACTTAAATGATTTACTTGTTTATAGATTAAA
AATAAATGAAAAAAATAGCTTAGCAAATACTTCAATGTAATAATAAAAGCAAATTTATGA
AAGAGTTGATCTTTCCAAAGAAAATGTGACAAAGAGTATAGTTGGCGTACTAAACCTTAC
AAGATCCTCTGTTGAAAAATTAAAAGAAGAAGAAATATTTGAAAAAATATCTAAAAGTAC
TCTCAGTCTTTTGGTTCATTTATCAGATATGAGAACAAACCAGCCCTATGTACGTTTGTT
TTTACCTGGGCTAAATATGGAAAATATAATTAAAGAAAATGTATGTGTAATAGGAGACAT
AACATGGTTTGAATCATCAAGTGATAAAAAAAAATGA