Identifiers and Description

Gene Model Identifier

TTHERM_00095540

Standard Name

CBF5 (Centromere Binding Factor 5)

Aliases

PreTt22853 | 7.m00302

Description

CBF5 tRNA pseudouridine synthase; Putative rRNA pseudouridine synthase

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• RNA binding (IEA) | GO:0003723

Biological Process

• RNA processing (IEA) | GO:0006396

Domains

• ( PF01472 ) PUA domain
• ( PF00831 ) ribosomal protein L29
• ( PF08068 ) DKCLD (NUC011) domain
• ( TIGR00012 ) ribosomal protein L29
• ( TIGR00451 ) uncharacterized domain 2
• ( TIGR00431 ) tRNA pseudouridine synthase B
• ( TIGR00425 ) rRNA pseudouridine synthase, putative
• ( PF08660 ) Oligosaccharide biosynthesis protein Alg14 like
• ( PF01509 ) TruB family pseudouridylate synthase (N

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 10.1%

TetraMine Data

TTHERM_00095540

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Stentor Coeruleus	SteCoe_38151	0
WormBase	WBGene00010478	9.997093137033517e-262	Putative H/ACA ribonucleoprote in complex subunit 4 status: Confirmed UniProt:O17919 p rotein_id:CAB07244.1
Tetrahymena borealis	EI9_00259.1	9.997093137033517e-262	rRNA pseudouridine synthase, f amily protein (426 aa)
DictyBase	DDB_G0281933	9.997093137033517e-262	nola4 on chromosome: 3 positio n 5161271 to 5163028
Oxytricha	Contig17910.0.g6	9.997093137033517e-262	DKCLD (NUC011) domain
SGD	YLR175W	9.997093137033517e-262	CBF5 Pseudouridine synthase ca talytic subunit of box H/ACA s mall nucleolar ribonucleoprote in particles (snoRNPs), acts o n both large and small rRNAs a nd on snRNA U2; mutations in h uman ortholog dyskerin cause t he disorder dyskeratosis conge nita

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00095540(coding)
ATGGGTAAAGATAAGAAGAAGCAAAGAAAGCAATCAAGCGAAGTTGCTGAAGTTGAAGAG
CAAGTCGTCGCTTAAGATTTTATTAAACCTTCCAAGGGAGGCGCTAAGTTGGATGCTAGC
CAATGGCCCTTATTATTAAAGAATTACGATAAGATGAACATCAGATCATCTCACTACACC
CCCATTCCTAACGGATCTAACCCCCTAGCTAGACCCATGGAAGAACATTTAAAATATGGT
GTTATGAATTTGGATAAGCCTTCTAACCCCTCTTCTCACGAAGTTGTCGCATGGGTTAAG
AAGTTGTTCGAAAATATCACTAAGATGGAAAAGACCGGTCACTCTGGTACCCTTGATCCT
AAGGTTACTGGTTGTTTGATCGTTTGTTTGAACCGTGCTACTAGATTGGTTAAGGCTCAA
TAGAGCGCTGGTAAGGAATACGTTGGTATTGTTAGACTCCACAACGATATTGAATCCGAA
CTCAAGCTCGCTAAGGCCCTCCAACAATTGACTGGTCCCCTTTTCCAAAAGCCCCCTCTT
ATTTCCGCTGTCAAGAGAGAATTGAGAGTTAGAACTATTTATGAATCTAAGTTAATTGAA
TACAATCCCGAAAAGAAGATGGGTATCATCTGGATGAGTTGCGAAGCTGGTACTTACGTT
AGAACCCTCTGTGTCCACTTAGGTCTCTTACTCGGTACTGGTGGTCATATGGAAGAACTT
AGAAGAGTTCGTTCTGGTATCCTCGACGAAAACTAATATCTCGTCACCATGCACGACGTC
AAGGACTCTATCTGGAGATATCAACACTTCAAGGATGAATCTTATCTCAGACGTGTTGTT
TTACCTCTTGAAGTTTTACTTACTAGTTTCCCTCGTATTGTCGTTAAGGATTCTACCGTT
AACTCTATCTGTTATGGTGCTAAGCTCATGCTCCCTGGTGTCCTCCGTTATGACAACAAC
ATTGAAAACGGTAAGGAAGTAGTTTTGATCACCACCAAGGGTGAAGCTATCGCTGTTGCT
GTTGCTTAAATGACCACCTCCGAACTCGCCACCTGCGATCACGGTATCGTCTGCAAGACC
AAGAGAGTTATTATGGACAGAGACCTCTATCCCAAGAGATGGGGTTTGGGTCCTAGAGCC
TTAAGAAAGAAAAACCTCATCAAGGAAGGTCTCTTAGATAAGCACGGAAAGCCCAACGAT
TAAACACCTAACGACTGGACTGTTTTCTACGTTAATGAAGAAAATAACAACATCCCCAAG
CCTGAAGAAAATTGA

>TTHERM_00095540(protein)
MGKDKKKQRKQSSEVAEVEEQVVAQDFIKPSKGGAKLDASQWPLLLKNYDKMNIRSSHYT
PIPNGSNPLARPMEEHLKYGVMNLDKPSNPSSHEVVAWVKKLFENITKMEKTGHSGTLDP
KVTGCLIVCLNRATRLVKAQQSAGKEYVGIVRLHNDIESELKLAKALQQLTGPLFQKPPL
ISAVKRELRVRTIYESKLIEYNPEKKMGIIWMSCEAGTYVRTLCVHLGLLLGTGGHMEEL
RRVRSGILDENQYLVTMHDVKDSIWRYQHFKDESYLRRVVLPLEVLLTSFPRIVVKDSTV
NSICYGAKLMLPGVLRYDNNIENGKEVVLITTKGEAIAVAVAQMTTSELATCDHGIVCKT
KRVIMDRDLYPKRWGLGPRALRKKNLIKEGLLDKHGKPNDQTPNDWTVFYVNEENNNIPK
PEEN

>TTHERM_00095540(gene)
ATGGGTAAAGATAAGAAGAAGCAAAGAAAGCAATCAAGCGAAGTTGCTGAAGTTGAAGAG
CAAGTCGTCGCTTAAGATTTTATTAAACCTTCCAAGGGAGGCGCTAAGTTGGATGCTAGC
CAATGGCCCTTATTATTAAAGAATTACGATAAGATGAACATCAGATCATCTCACTACACC
CCCATTCCTAACGGATCTAACCCCCTAGCTAGACCCATGGAAGAACATTTAAAATATGGT
GTTATGAATTTGGATAAGCCTTCTAACCCCTCTTCTCACGAAGTTGTCGCATGGGTTAAG
AAGTTGTTCGAAAATATCACTAAGATGGAAAAGACCGGTCACTCTGGTACCCTTGATCCT
AAGGTTACTGGTTGTTTGATCGTTTGTTTGAACCGTGCTACTAGATTGGTTAAGGCTCAA
TAGAGCGCTGGTAAGGAATACGTTGGTATTGTTAGACTCCACAACGATATTGAATCCGAA
CTCAAGCTCGCTAAGGCCCTCCAACAATTGACTGGTCCCCTTTTCCAAAAGCCCCCTCTT
ATTTCCGCTGTCAAGAGAGAATTGAGAGTTAGAACTATTTATGAATCTAAGTTAATTGAA
TACAATCCCGAAAAGAAGATGGGTATCATCTGGATGAGTTGCGAAGCTGGTACTTACGTT
AGAACCCTCTGTGTCCACTTAGGTCTCTTACTCGGTACTGGTGGTCATATGGAAGAACTT
AGAAGAGTTCGTTCTGGTATCCTCGACGAAAACTAATATCTCGTCACCATGCACGACGTC
AAGGACTCTATCTGGAGATATCAACACTTCAAGGATGAATCTTATCTCAGACGTGTTGTT
TTACCTCTTGAAGTTTTACTTACTAGTTTCCCTCGTATTGTCGTTAAGGATTCTACCGTT
AACTCTATCTGTTATGGTGCTAAGCTCATGCTCCCTGGTGTCCTCCGTTATGACAACAAC
ATTGAAAACGGTAAGGAAGTAGTTTTGATCACCACCAAGGGTGAAGCTATCGCTGTTGCT
GTTGCTTAAATGACCACCTCCGAACTCGCCACCTGCGATCACGGTATCGTCTGCAAGACC
AAGAGAGTTATTATGGACAGAGACCTCTATCCCAAGAGATGGGGTTTGGGTCCTAGAGCC
TTAAGAAAGAAAAACCTCATCAAGGAAGGTCTCTTAGATAAGCACGGAAAGCCCAACGAT
TAAACACCTAACGACTGGACTGTTTTCTACGTTAATGAAGAAAATAACAACATCCCCAAG
CCTGAAGAAAATTGA