Identifiers and Description

Gene Model Identifier

TTHERM_00442590

Standard Name

BRF1 (Transcription initiation factor TFIIIB, BRF1 subunit)

Aliases

PreTt05659 | 50.m00228 | 3681.m00087

Description

BRF1 transcription factor TFIIB repeat protein; Transcription factor TFIIB repeat family protein

Genome Browser (Macronucleus)

Genome Browser (Micronucleus)

Gene Ontology Annotations

Molecular Function

• translation initiation factor activity (IEA) | GO:0003743
• protein binding (IEA) | GO:0005515

Biological Process

• translational initiation (IEA) | GO:0006413

Domains

• ( PF08271 ) TFIIB zinc-binding
• ( PF07741 ) Brf1-like TBP-binding domain
• ( PF00382 ) Transcription factor TFIIB repeat
• ( TIGR00072 ) hydrogenase maturation protease
• ( PF06827 ) Zinc finger found in FPG
• ( PF07754 ) Domain of unknown function (DUF1610)
• ( PF06844 ) Protein of unknown function (DUF1244)

Gene Expression Profile

• Tetrahymena Functional Genomics Database:

Change in Gene Expression

TMHMM

TMHMM

Signal Peptide

Signal Peptide Present?: No
Presense Probability: 9.8%

TetraMine Data

TTHERM_00442590

WebApollo

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Tetrahymena Stock Center

No Data fetched for StockID

Homologs (v.2006 protein sequences)

Source	Identifier	Score	Description
Tetrahymena borealis	EI9_12592.1	9.997093137033517e-262	transcription factor TFIIB rep eat family protein (579 aa)
Oxytricha	Contig17369.0.g57	2.0009381340492598e-66	Transcription factor TFIIB rep eat
DictyBase	DDB_G0281215	1.0003292389192957e-45	brf1 on chromosome: 3 position 4228761 to 4230881
SGD	YGR246C	2.9986404383886433e-43	BRF1 TFIIIB B-related factor, one of three subunits of RNA p olymerase III transcription in itiation factor TFIIIB, binds TFIIIC and TBP and recruits RN A pol III to promoters, amino- terminal half is homologous to TFIIB
WormBase	WBGene00000271	9.999888128184441e-42	locus:brf-1 status:Partially _confirmed UniProt:Q20429 protein_id:CCD66264.1

General Information

No Data fetched for General Information

Associated Literature

No Data fetched for Associated Literature

Sequences

>TTHERM_00442590(coding)
ATGATAGATACAATAGATTACAAATCAAATAAGCAAGTTTGTAAAAAGTGTGGTCATGTT
AATTATGATCTAGACGGTGATGAAGCAGACCAATAAAAATGCAGAAATTGTGGTTTTGTT
ATGTATGAAAACTGCTTCGAATCAGGTATTCAATTTACTGATACCAAGATCGATGGCTAG
TTGCACGATATGTCTAACTTTGGAAGAGATAATACTAAGTATGCTGAAGAATGCATAGCT
ACAATGATAAGAGATTTAAAAATAAAAAGCGAATACCCAGATTATTTAGAAAGAATTGGC
GAAACGCCTTTGAGAATCATGAAATTTGCATATAAAGCTTACTTTTTAGATCACGGTTCA
AATATACATCATTATTCTGCCGCTGCCCTTTATATAGCATTAAGATTTTAAAAGGCTCCC
TTTTTACTTATGGATTTTTCAGAAAAACTTTGCATAAATCTTTTCAAGCTCGCAAGATGC
TATAGAAAATTAGCTAAATTTTTAAATGTAACTCTTAAATTAAATGAAAGACTCCCTTCA
ATAGATCCATCAATTTATATTCCACGTTTTTGCAAGATGCTAGAATTTAATGATAAAGTT
GATTAAGTTAAGGAAACAGCTATCAAACTTTTAAAAAGAATGAAATTGGATTGGATGAGT
CATGGTCGTCGACCAAGTTCTTTGTGTGGTGCTGCCATTTTAATTGCTGCAAGAATGCAT
GGATTTAAGAGAACTACTAGTGAAGTTTGCAAAGTAGTTTATGTTTGTGAAGAAACCTTA
AGAAAAAGATTAGAAGAATTCAAAGAAACAGATGTTGCCAAATTAACAAGAGAAAAATTC
GATGAAATTTAAGATATAGAGTTGATGGGAAGGGAGCGTGATCCTCCTGCTTTCATAAAG
GCTTTAAAAAATTAATAAGAAACTTTAAAAAAAATAAAACCAAATGAAGAAAATGATGAT
GAAATAAATAAACAATTAGAAGATGCAGCAAATATCATAGAGACTCAAGTTAAGTCTACC
AGTAACGAGGGATAATAAGTAAATTAAGATTATGAAATGAGTGATGATATTTCTATTGGA
GATGATGAAGAAGATGAGGGTGAAAATAGTAAATAATAAAATGGAGAAGAGTAGAAAAAG
CAACTTAAGCCTTTATCAGAATCTGAAAGATAAGTCAAAACTTTAGTAAAAAAAGAAGAT
GCTAAATAAATTGGAATTATTAATGAGAATGGTTATTCCTTAAATGTTAGAGAAGATTTA
TCAGATATGAGTGAAGAAGATGTAAATCAATTTATACTCACTAATGAAGAACATACTGTT
AAAAGTATCATATGGCACAGTATGAATGAAACCTGGTTGAGGGAATAATAAAGAAAGGAT
CCAAAAGAAGAAAAAAAAGAATGCAAAAAAAGAAACAAAAGAAGAAATGATTAACTTATG
AATGAAGATGACCCAGTAGATGCCTTATTTAAAAGTAAAAAAATTAGAGAAAAGCTAGAT
GAAAAGAAGGTTCGTGATATGTTCTTATAAATAGAAAAAGTTAAAATGACACAATTGACA
GATATCTTCACAACAGATAAGCCACCTGCTGAATCGCTTGAAACTACATAAAAAATGATA
TACAATAGCGAACTAATTGTTTGCAATGGCCCTATTGATTACATGAATAGATATGGAGCT
AGTAACGATCAGAGCACTCGTGATGCTCCTCAAATAGATCATGATGAAGATGGATTTGAG
TATGATTGA

>TTHERM_00442590(protein)
MIDTIDYKSNKQVCKKCGHVNYDLDGDEADQQKCRNCGFVMYENCFESGIQFTDTKIDGQ
LHDMSNFGRDNTKYAEECIATMIRDLKIKSEYPDYLERIGETPLRIMKFAYKAYFLDHGS
NIHHYSAAALYIALRFQKAPFLLMDFSEKLCINLFKLARCYRKLAKFLNVTLKLNERLPS
IDPSIYIPRFCKMLEFNDKVDQVKETAIKLLKRMKLDWMSHGRRPSSLCGAAILIAARMH
GFKRTTSEVCKVVYVCEETLRKRLEEFKETDVAKLTREKFDEIQDIELMGRERDPPAFIK
ALKNQQETLKKIKPNEENDDEINKQLEDAANIIETQVKSTSNEGQQVNQDYEMSDDISIG
DDEEDEGENSKQQNGEEQKKQLKPLSESERQVKTLVKKEDAKQIGIINENGYSLNVREDL
SDMSEEDVNQFILTNEEHTVKSIIWHSMNETWLREQQRKDPKEEKKECKKRNKRRNDQLM
NEDDPVDALFKSKKIREKLDEKKVRDMFLQIEKVKMTQLTDIFTTDKPPAESLETTQKMI
YNSELIVCNGPIDYMNRYGASNDQSTRDAPQIDHDEDGFEYD

>TTHERM_00442590(gene)
ATGATAGATACAATAGATTACAAATCAAATAAGCAAGTTTGTAAAAAGTGTGGTCATGTT
AATTATGATCTAGACGGTGATGAAGCAGACCAATAAAAATGCAGAAATTGTGGTTTTGTT
ATGTATGAAAACTGCTTCGAATCAGGTATTCAATTTACTGATACCAAGATCGATGGCTAG
TTGCACGATATGTCTAACTTTGGAAGAGATAATACTAAGTATGCTGAAGAATGCATAGCT
ACAATGATAAGAGATTTAAAAATAAAAAGCGAATACCCAGATTATTTAGAAAGAATTGGC
GAAACGCCTTTGAGAATCATGAAATTTGCATATAAAGCTTACTTTTTAGATCACGGTTCA
AATATACATCATTATTCTGCCGCTGCCCTTTATATAGCATTAAGATTTTAAAAGGCTCCC
TTTTTACTTATGGATTTTTCAGAAAAACTTTGCATAAATCTTTTCAAGCTCGCAAGATGC
TATAGAAAATTAGCTAAATTTTTAAATGTAACTCTTAAATTAAATGAAAGACTCCCTTCA
ATAGATCCATCAATTTATATTCCACGGTAATACTCTACACAAACAAACAAATAAATACTC
ACATTAGTGCTATTTATCAAATTTCTATGCTAATTTCTTATTTAATTTTTTAACTTGAGC
GCTTTTTTTCATTTAATGAAAAGCGTCTACAGTGTTATTTATCATAAAGAAATAAATCTA
TAAAAAATATTATTTATATTAAATTCTTATATTAGCAAAGAAAGAATGTGTGTGTATTTA
ACGAATCTTATTTATTTTATTAATAAAAATGTTTTATTTTGTTTATAAATATTACAGTTT
TTGCAAGATGCTAGAATTTAATGATAAAGTTGATTAAGTTAAGGAAACAGCTATCAAACT
TTTAAAAAGAATGAAATTGGATTGGATGAGTCATGGTCGTCGACCAAGTTCTTTGTGTGG
TGCTGCCATTTTAATTGCTGCAAGAATGCATGGATTTAAGAGAACTACTAGTGAAGTTTG
CAAAGTAGTTTATGTTTGTGAAGAAACCTTAAGAAAAAGATTAGAAGAATTCAAAGAAAC
AGATGTTGCCAAATTAACAAGAGAAAAATTCGATGAAATTTAAGATATAGAGTTGATGGG
AAGGGAGCGTGATCCTCCTGCTTTCATAAAGGCTTTAAAAAATTAATAAGAAACTTTAAA
AAAAATAAAACCAAATGAAGAAAATGATGATGAAATAAATAAACAATTAGAAGATGCAGC
AAATATCATAGAGACTCAAGTTAAGTCTACCAGTAACGAGGGATAATAAGTAAATAATAA
TATAAATAATATAAATAATCCAAGTATTTTAAATAAATTTTATCAAATCATATTGATTTA
GGTAAATTAAGATTATGAAATGAGTGATGATATTTCTATTGGAGATGATGAAGAAGATGA
GGGTGAAAATAGTAAATAATAAAATGGAGAAGAGTAGAAAAAGCAACTTAAGCCTTTATC
AGAATCTGAAAGATAAGTCAAAACTTTAGTAAAAAAAGAAGATGCTAAATAAATTGGAAT
TATTAATGAGAATGGTTATTCCTTAAATGTTAGAGAAGATTTATCAGATATGAGTGAAGA
AGATGTAAATCAATTTATACTCACTAATGAAGAACATACTGTTAAAAGTATCATATGGCA
CAGTATGAATGAAACCTGGTTGAGGGAATAATAAAGAAAGGATCCAAAAGAAGAAAAAAA
AGAATGCAAAAAAAGAAACAAAAGAAGAAATGATTAACTTATGAATGAAGATGACCCAGT
AGATGCCTTATTTAAAAGTAAAAAAATTAGAGAAAAGCTAGATGAAAAGAAGGTTCGTGA
TATGTTCTTATAAATAGAAAAAGTTAAAATGACACAATTGACAGATATCTTCACAACAGA
TAAGCCACCTGCTGAATCGCTTGAAACTACATAAAAAATGATATACAATAGCGAACTAAT
TGTTTGCAATGGCCCTATTGATTACATGAATAGATATGGAGCTAGTAACGATCAGAGCAC
TCGTGATGCTCCTCAAATAGATCATGATGAAGATGGATTTGAGTATGATTGA